BAC Information

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BAC

Clone NameMSMg01-489O14
Chromosome15 (Build37)
Map Location 92,270,744 - 92,271,312
singlet/doubletsinglet
Overlap genePdzrn4
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489O14.T7 (MSMg01no489_o14.b1)MSMg01-489O14.TJ (MSMg01no489_o14.g1)
ACCAG568275AG568276
length770756
length of high quality
(start - end)
608 (48 - 655)623 (74 - 696)
definitionCHROMAT_FILE: MSMg01no489_o14.b1 PHD_FILE: MSMg01no489_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:19 2005CHROMAT_FILE: MSMg01no489_o14.g1 PHD_FILE: MSMg01no489_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACAGATGAGGAGGAGGAGGAGATATACTTCCCATGCCCCTGT
GCTGATTGACTAGTAATTGAAGTGAGACATGTAGGGCATATGACGGTTGC
TGTCATCTTGATTCAACTACCAAGAGAAACTGGTCCAGGACCATTCAGCT
CTGACAACCAAGAATGATTCGTCCACCAACACTATCAGCGATAGGAATGC
TTCGTGTCTTTAAGCCACTGGACTTTGGAATAATTTGTTCTACATCAGTA
GAGGGCTAGTACAGTAATGGAGAAGAAAAATAACCATCTACTATGTACTT
ATTTACACAAAGGAAAAAAATCCATGTCAAGACAAGTAGAAACGGTTCAT
TGTCTATGAAACCAAATGACCCACTCTGAAGCTGGACCAAAGATGTAAAC
AGGCACCTGGCTGATGAGAACGTAGAAAAATTGTAAATAGGCACGTGAAA
AGTGTCTCACATGGTAAGCCATGATGGAAACACAAATTAGAAAGCCAATG
AAATATCACTGCAGACTCATTAAAATGGTGACAACTGAAAAATGATGTGA
AGACTTAATTAGTCGCGTCGTTCTGCAGTAACTGTCAATCAAGCAGCTAT
GCAGAAGACGGTGACTCAGAGAATATGGATGTACTCGCCACATGATCTGG
CCACTACACTAGAGGTGCTTATCCCATAGACAAAAAAAAAATGAGTATGC
ATATAAAATATGCATATATN
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAAGCTGCAGTCAGCAACTTGGATGT
AGACGGGAAGACCTCGACTTGGTGTGCTTCCCTAGGAGCGAGTGGGCAGA
GTGGATTCAACATTCCACACGCATTTGTTCTTCATAGTTATGGGAATCCA
TTTTAGCATGCTATTTAAGGGTGCCTGTAATTGACTGATACCTACAGTTG
AACTAAAGACTTAGACTACCTCTAGCAATCCATTCCAATGGCAAAAATTC
CCTAGTCTGAATTCTTATCNGTTGCTTCAATCATGGCCAGATTACATGTA
TTAAAAAAAATAATAATCTAATTCTAAACACACAATAGTTACAATCCAGA
GCCAATCTTAACATTGACCATATTGACTGATGGGAACATTTCTGTGTCTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATTCAACAGTCATGG
AGACAGGAAATACTTAGCATCCCTTTAGAGACAGCCGAGTTACTCAGCAT
CTGCTGTGGAATGGGCAAACCTGAAACTAGGATCCACATCCTAGCTCTCC
TACCCAGACACATTAGAATTCATTCAGAAACCCAGAGAGCTAGGGGAGTG
TTGGGGAAGCAGAGGGGATGGTACAGCAGAGACACAGAAAGATGTCAGAG
AAAGATGAGAGAGAGAGAGAGAACAAGAGAGAGAGAGAACCAGAGAGAGA
GAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_o14.g1 MSMg01no489_o14.g1 CHROMAT_FILE:
MSMg01no489_o14.g1 PHD_FILE: MSMg01no489_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:19 2005
         (623 letters)



>mm_chr15_92270744_92271766
          Length = 1023

 Score =  982 bits (508), Expect = 0.0
 Identities = 550/569 (96%), Gaps = 8/569 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   caagctgcagtcagcaacttggatgtagacgggaagacctcgacttggtgtgcttcccta 61
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 569 caagctgcagtcagcaacttggatgtagacgggaagacctcgacttggtgcgcttcccta 510

                                                                       
Query: 62  ggagcgagtgggcagagtggattcaacattccacacgcatttgttcttcatagttatggg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggagcgagtgggcagagtggattcaacattccacacgcatttgttcttcatagttatggg 450

                                                                       
Query: 122 aatccattttagcatgctatttaagggtgcctgtaattgactgatacctacagttgaact 181
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 449 aatccattttagcatgctatttaagggtgcctgtaattgattgatacctacggttgaact 390

                                                                       
Query: 182 aaagacttagactacctctagcaatccattccaatggcaaaaattccctagtctgaattc 241
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaagacttagattacctctagcaatccattccaatggcaaaaattccctagtctgaattc 330

                                                                       
Query: 242 ttatcngttgcttcaatcatggccagattacatgtattaaaaaaaataataatctaattc 301
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttatctgttgcttcaatcatggccagattacatgtattaaaaaaaataataatctaattc 270

                                                                       
Query: 302 taaacacacaatagttacaatccagagccaatcttaacattgaccatattgactgatggg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taaacacacaatagttacaatccagagccaatcttaacattgaccatattgactgatggg 210

                                                                       
Query: 362 aacatttctgtgtc--------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaa 413
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aacatttctgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaa 150

                                                                       
Query: 414 ttcaacagtcatggagacaggaaatacttagcatccctttagagacagccgagttactca 473
           |||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 149 ttcaacagtcctagagagaggaaatacttagcatcccttaagagacagccgagttactca 90

                                                                       
Query: 474 gcatctgctgtggaatgggcaaacctgaaactaggatccacatcctagctctcctaccca 533
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 89  gcatctgctgtggaatgggcaaacctgaaactaggatccacaccctagctctcctactca 30

                                        
Query: 534 gacacattagaattcattcagaaacccag 562
           |||||||||||||||||||||||||||||
Sbjct: 29  gacacattagaattcattcagaaacccag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)