BAC Information

Click to search

BAC

Clone NameMSMg01-489P04
Chromosome15 (Build37)
Map Location 23,337,361 - 23,337,717
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489P04.T7 (MSMg01no489_p04.b1)MSMg01-489P04.TJ (MSMg01no489_p04.g1)
ACCAG568303AG568304
length979727
length of high quality
(start - end)		---353 (329 - 681)
definitionCHROMAT_FILE: MSMg01no489_p04.b1 PHD_FILE: MSMg01no489_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:22 2005CHROMAT_FILE: MSMg01no489_p04.g1 PHD_FILE: MSMg01no489_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACGCACTAACCTTTTATCTGCGCCACCCTGACCCCACCATCTTCTCTCT
CCCCAGAGTGGTGTGTTTGAACCTTCCGCTCTTTTCTTCTCATCTGAGGA
CGCAAGGGCGTGCGCCAGGGTGGAGACGGGCATAAAAAGCGCTAATAACC
CCTCTTGCTCGTTCACCACTCTCCCGACCCCGCCCGCCTCGCAACTCGAT
AAACCAACAAATAAGAAGTACAACAACATATAACGCTTTCTCGCGCTCAC
ATGTTAGCCCCCGAGTTAGACGATAACATACAAACCCCCCATTATCCCCC
GCCGCCCGCCGCCTTACAAGCCACGGTCCGCTTAGACAAGCTGAGCCATT
TTATTACGAGGAACATGACCAAACTTTATTTTAATACCACACTACGTCAG
ATAAATACCCGTCCTTATCATTTATGTATAAACCGCTTTAACACCCGAAG
ATCTACCGCCTCCCCGTATTTATATGGTCGCATGCCGCCACTGTCGTTTT
ATAATTTTTTTATAATAAGCCCACACACATTTAAAATCTACCCCCATCTC
TTCCCGCCCTTCTTTCGCTTAATACGCGCACCACCGAACTCGTGCTAGCG
AGGAATGCAGGATAGAATGTCACTACCCACCGGCTGCAGATAGTCGAGAT
AAGAACGGAAATTTGTTATATATGTTCTGCGGTGAGTATGGTGGACAACA
TATATATTATGTAACCATTACCTCTTCCTCCGAAACACACGATACTTGGT
ATTCTATCAGGACAAGGAATAACAGATCTTCGCAAACTAACCCATAGACG
AATGTACATGGCTATAATCCGAGTTAGCGTAACCTTCCCGCCGCTAATTT
TTACGTGCATGTTACCTAACATATACTCAAAGATCTAATTAAGCCCCCGC
GACGCCACACCCCGAGTACTCACTATTTTATATACTATTCCACATTATTA
TTTCTCGCTCCTGAACAAATTTATCGCTG

GTAATNNTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACACAAAAAAGTCTTAGTGAATTTTCTTTAC
CATATACATGCTGTATTTACAAATATATAAAAGATAATAATTGAGAGAAA
CAAACAATATTCTCACTAATACTTTTAGAGCAAATCAGTATAAAAATATA
CTTTTGACACATGCTTAAAATTAAGTTTTTGGTGAAAGAGAGAGAGCATA
ATGAATACAGAAAGTACCTGTGAGGAATGAGATTTGTTACTGAAATGAAG
GACAACTTTTCTAATACTCTTGTTTATGAAACATAGTTACTTTTACCCTA
TGCCTATAATATCCCAGGAAAATTGAGTGACAAATGAAGAACTCAGTGAT
TTGTATAAAGTAACATTTGTTGAAAAAAGTATTTGATTAAAGGCTGTCAT
TATTGATATCGACTGTTTATTATAGTCATAGCTTGTCTGTTGGTTAAGTA
AAATCTAATTTGAATATAATATGTACATCTTATTTTGATAAATTGAAGTT
CTTTTATTTTTCACAGAGTTTAAAATATAATAGGAAGGCTTAAAAGTACA
TAATCATAACTCATAATTCTGTGTGAGAAAAGAAAGTCTTCCAGAAGATT
TCTTGCTAGGTAAGGTGCAAATAGAAGTGTTTACTTGCTAGTGATAAATT
AGCCAACATTGTAATGAGATTACAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_p04.g1 MSMg01no489_p04.g1 CHROMAT_FILE:
MSMg01no489_p04.g1 PHD_FILE: MSMg01no489_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:22 2005
         (353 letters)



>mm_chr15_23337161_23337917
          Length = 757

 Score =  656 bits (339), Expect = 0.0
 Identities = 351/357 (98%), Gaps = 4/357 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacatagttacttttaccctatgcctataatatcccaggaaaattgagtgacaaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacatagttacttttaccctatgcctataatatcccaggaaaattgagtgacaaatgaa 260

                                                                       
Query: 61  gaactcagtgatttgtataaagtaacatttgttgaaaaaagtatttgattaaaggctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gaactcagtgatttgtataaagtaacatttgttgaaaaaagtatttgatgaaaggctgtc 320

                                                                       
Query: 121 attattgatatcgactgtttattatagtcatagcttgtctgt----tggttaagtaaaat 176
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 321 attattgatatcgactgtttattatagtcatagcttgtctgtctgttggttaagtaaaat 380

                                                                       
Query: 177 ctaatttgaatataatatgtacatcttattttgataaattgaagttcttttatttttcac 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaatttgaatataatatgtacatcttattttgataaattgaagttcttttatttttcac 440

                                                                       
Query: 237 agagtttaaaatataataggaaggcttaaaagtacataatcataactcataattctgtgt 296
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtttaaaatataataggaaggcttaaaagtacataatcataactcataattctgtgt 500

                                                                    
Query: 297 gagaaaagaaagtcttccagaagatttcttgctaggtaaggtgcaaatagaagtgtt 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaaaagaaagtcttccagaagatttcttgctaggtaaggtgcaaatagaagtgtt 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 757
Length adjustment: 9
Effective length of query: 344
Effective length of database: 748
Effective search space:   257312
Effective search space used:   257312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |