BAC Information

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BAC

Clone NameMSMg01-490E23
Chromosome15 (Build37)
Map Location 64,126,862 - 64,300,591
singlet/doubletdoublet
Overlap geneDdef1
Upstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik
Downstream geneAdcy8, LOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490E23.T7 (MSMg01no490_e23.b1)MSMg01-490E23.TJ (MSMg01no490_e23.g1)
ACCAG568579AG568580
length760754
length of high quality
(start - end)		618 (71 - 688)628 (81 - 708)
definitionCHROMAT_FILE: MSMg01no490_e23.b1 PHD_FILE: MSMg01no490_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:52 2005CHROMAT_FILE: MSMg01no490_e23.g1 PHD_FILE: MSMg01no490_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,299,974 - 64,300,591)(64,126,862 - 64,127,489)
sequence
TTTGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATAATTCTCCTTGATATCTTGGAAAGACACATTGTTTTC
TTGATATTTTGGTAAGATATAAACATATAAACATGTAAACATGTTTACAT
ATGCTCCTGGGTGATCATCAACAGTACACGGACTTCTGTTATTCATCTGT
CAAGTTATGGAATGGAGAGGGAAGACATAAAGTGACATCCAGAAGGACAG
GTGATTCCAGTTGCTTCATTTAAACTTGATGACTATTGTTCCATTTTTAC
TCTGCATTCCTAGTTCTGAAACTGTGTGGCTGTTTTGAGCACTGAGACCA
TGTGGATGTGGCTACCTAAGCACTGCCCTTCTAGCCATAAAGCCTAGTGC
CATTTTCCCAACTCTCACTGGAAATGACATGTGTTAATAAAGGATGAATA
GAAAGTTCCTTGCATAGGAAGAACATTTAGCTGTATCTTTATGTACAACA
GACTGCAGCTAGACTTGGGCACTTTGTAGCTTGGCTTGATTCATCACCAC
TCCAAAAGATGCAGTTGTCCTCATCAAATGCTTAGCATATACTGATTCCT
CATTAAAGGGGAATGTGCATCCCACTATTTCAAAGCCTCCCTTCACTCTG
TGTTTAGACCACATGTCGATCCTGGTTTCTTTATGAATCTTTGTCAGTTT
GCTATCATTTCATCCCTTGATGTTGCCCCAAAGAAGAGTCGCATCAGATG
ATCTACCGGG

NNNNCCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTTCTGCCACAGGCAC
AGTCAGTAGGGTGTAACAGAAAACGTGCATCCTCTGCTGCATCACCTCTT
AACCACTCCACATGGCCGAGCCTTGCTTTCTGCAGCTCAGGGCTGTAGCT
CCCTGCTACACTACTGACTCTTCGAGAGGGCCATCAGACTCTGGCTGAGG
GCTGCTGATCTTGGTTTGCTTGCTGCTCCAAGAGCTCATAAACCACATAA
GAGTTCATTCCTCGGCCATACCCCTGAGGGCAGCTGTTGCTGAGCTCTTA
GTACACAATGGGTGATTCAGAATCGAAGCTGACGGCCCGCAATCAAAATC
ACAAGGTTGGAGCTGGAGATGTACTCTAGGTGGCAGAGTGTTCACCTACC
ATGCGTGAGGCTCTGGGTTGAATGGCCAACATTTCACAAAAGCCAGTGTA
GCTGCACACTCCTAATCCCAGTTGGAGATGGTAGCAGAAGGATCAAGGCA
ACTCTTGGCCACAGAGCAAGCTCAGGGCCAGCATGGAACACAGGAGAACC
TTTCTAAGAAAAAGAAAATCACAAGGTGGGGACAGAATGATGGAAACACG
TGCACATTAATAAGTAAGTGCCTTACTATCCTATTCTTCCATGTGAGCTG
AAAAGCAGTCAGGAAGACTGCATCTGAAGAGACGGTGGGCTGTATACAAG
CCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_e23.b1 MSMg01no490_e23.b1 CHROMAT_FILE:
MSMg01no490_e23.b1 PHD_FILE: MSMg01no490_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:52 2005
         (618 letters)



>mm_chr15_64299774_64300791
          Length = 1018

 Score = 1133 bits (586), Expect = 0.0
 Identities = 610/618 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgatatcttggaaagacacattgttttcttgatattttggtaagatataaacatataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cttgatatcttggaaagacacattgttttcttgatattttggtaagatataaacatataa 759

                                                                       
Query: 61  acatgtaaacatgtttacatatgctcctgggtgatcatcaacagtacacggacttctgtt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 acatgtaaacacgtttacatatgctcctgggtgatcatcaacagtacacggacttctgtt 699

                                                                       
Query: 121 attcatctgtcaagttatggaatggagagggaagacataaagtgacatccagaaggacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 attcatctgtcaagttatggaatggagagggaagacataaagtgacatccagaaggacag 639

                                                                       
Query: 181 gtgattccagttgcttcatttaaacttgatgactattgttccatttttactctgcattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtgattccagttgcttcatttaaacttgatgactattgttccatttttactctgcattcc 579

                                                                       
Query: 241 tagttctgaaactgtgtggctgttttgagcactgagaccatgtggatgtggctacctaag 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 578 tagttctgaaactgtgtggctgttttgagcactgagaccttgtggatgtggctacctaag 519

                                                                       
Query: 301 cactgcccttctagccataaagcctagtgccattttcccaactctcactggaaatgacat 360
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cactgacctcctagccataaagcctagtgccattttcccaactctcactggaaatgacat 459

                                                                       
Query: 361 gtgttaataaaggatgaatagaaagttccttgcataggaagaacatttagctgtatcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtgttaataaaggatgaatagaaagttccttgcataggaagaacatttagctgtatcttt 399

                                                                       
Query: 421 atgtacaacagactgcagctagacttgggcactttgtagcttggcttgattcatcaccac 480
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atgtacaagagtctgcagctagacttgggcactttgtagcttggcttgattcatcaccac 339

                                                                       
Query: 481 tccaaaagatgcagttgtcctcatcaaatgcttagcatatactgattcctcattaaaggg 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tccaaaagatgccgttgtcctcatcaaatgcttagcatatactgattcctcattaaaggg 279

                                                                       
Query: 541 gaatgtgcatcccactatttcaaagcctcccttcactctgtgtttagaccacatgtcgat 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gaatgcgcatcccactatttcaaagcctcccttcactctgtgtttagaccacatgtcgat 219

                             
Query: 601 cctggtttctttatgaat 618
           ||||||||||||||||||
Sbjct: 218 cctggtttctttatgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no490_e23.g1 MSMg01no490_e23.g1 CHROMAT_FILE:
MSMg01no490_e23.g1 PHD_FILE: MSMg01no490_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:52 2005
         (628 letters)



>mm_chr15_64126662_64127689
          Length = 1028

 Score = 1168 bits (604), Expect = 0.0
 Identities = 622/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatttctgccacaggcacagtcagtagggtgtaacagaaaacgtgcatcctctgctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatttctgccacaggcacagtcagtagggtgtaacagaaaacgtgcatcctctgctgc 260

                                                                       
Query: 61  atcacctcttaaccactccacatggccgagccttgctttctgcagctcagggctgtagct 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcacctcttaaccacgccacatggccgagccttgctttctgcagctcagggctgtagct 320

                                                                       
Query: 121 ccctgctacactactgactcttcgagagggccatcagactctggctgagggctgctgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ccctgctacactactgactcttcgagagggccatcagactctggctgggggctgctgatc 380

                                                                       
Query: 181 ttggtttgcttgctgctccaagagctcataaaccacataagagttcattcctcggccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtttgcttgctgctccaagagctcataaaccacataagagttcattcctcggccata 440

                                                                       
Query: 241 cccctgagggcagctgttgctgagctcttagtacacaatgggtgattcagaatcgaagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctgagggcagctgttgctgagctcttagtacacaatgggtgattcagaatcgaagct 500

                                                                       
Query: 301 gacggcccgcaatcaaaatcacaaggttggagctggagatgtactctaggtggcagagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacggcccgcaatcaaaatcacaaggttggagctggagatgtactctaggtggcagagtg 560

                                                                       
Query: 361 ttcacctaccatgcgtgaggctctgggttgaatggccaacatttcacaaaagccagtgta 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 ttcacctaccatgcgtgaggctctgggttgaatggccaacatttcataaaagccagtgta 620

                                                                       
Query: 421 gctgcacactcctaatcccagttggagatggtagcagaaggatcaaggcaactcttggcc 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgcacacacctaatcccagttggagatggtagcagaaggatcaaggcaactcttggcc 680

                                                                       
Query: 481 acagagcaagctcagggccagcatggaacacaggagaacctttctaagaaaaagaaaatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagagcaagctcagggccagcatggaacacaggagaacctttctaagaaaaagaaaatc 740

                                                                       
Query: 541 acaaggtggggacagaatgatggaaacacgtgcacattaataagtaagtgccttactatc 600
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaggtggggacagaatgacagaaacacgtgcacattaataagtaagtgccttactatc 800

                                       
Query: 601 ctattcttccatgtgagctgaaaagcag 628
           ||||||||||||||||||||||||||||
Sbjct: 801 ctattcttccatgtgagctgaaaagcag 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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