BAC Information

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BAC

Clone NameMSMg01-490I24
Chromosome15 (Build37)
Map Location 91,824,523 - 91,824,911
singlet/doubletsinglet
Overlap genenone
Upstream geneKif21a, EG635871, Abcd2, LOC545126, Slc2a13, Lrrk2, Muc19, Smgc
Downstream geneLOC100042529, Cntn1, Pdzrn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490I24.T7 (MSMg01no490_i24.b1)MSMg01-490I24.TJ (MSMg01no490_i24.g1)
ACCAG568768AG568769
length767759
length of high quality
(start - end)
625 (81 - 705)575 (77 - 651)
definitionCHROMAT_FILE: MSMg01no490_i24.b1 PHD_FILE: MSMg01no490_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:11 2005CHROMAT_FILE: MSMg01no490_i24.g1 PHD_FILE: MSMg01no490_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATGCG
CGGAATTCTCACCTGATGCATACAGAATGGCAGAGAAGCACTTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTTCTCCATTGTTGG
TGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAACTGGACATAGTACTACTGTATGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAA
CCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCA
AGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGG
AACAAAACACCCATGGN
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATGGTGTATTTTGATCATATTC
TTTCTCCTCCTCCAACTCGTCTCACACCTCCCCAGAACCCAACTTCATGC
TCTTTCCCTCTCTCTTCTTGTTCTTCTTGTTCTGTTTTTCTTGTTCTTCT
TGTTCTTCTTCTCCTCCTCCTCCTCCCCCCTTCCCTCCCTCCCTCTCATT
TCTCTCTGTCTCCTCTTCTCTCTCTTAAAACAAACAAACAACACAGAAGC
AGGAGACTGAAGTGAATCAAGAGAATGTTTTTTGTGGGAGGGCGGGGCAG
AGGAATGGCTCCAGGAGGGAATAACTTACACAAAGGTCTTAGTGAAGCCA
TATGAAAACTTACATCTGTAGCACATTTTTTTATATAGATATATTTTTAA
TTAGGTATTTTCCTCATTTACATTTCCAATGGTATCTCAAAAGTCCCCCA
TACCCTCCCTCCCACTCCACTACCCACCAACTCCCACTTTTTGGCCCTGG
CGTTCCCCTGTACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTC
TTTCCAGTGATGGCCTACTAGGCCATCTTTTGATACATATGCAGCTAGAA
TCAAGAGCTCCGGGTACTGGTTAGTTCATAATGCTGTTTCACCTATAGGG
TTGCAGATCCCTTTAGCTNCTTGGGTACTTTCTCTAGCTCCTCCATTGGG
GCCCTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_i24.g1 MSMg01no490_i24.g1 CHROMAT_FILE:
MSMg01no490_i24.g1 PHD_FILE: MSMg01no490_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:11 2005
         (575 letters)



>mm_chr15_91824139_91825113
          Length = 975

 Score =  659 bits (341), Expect = 0.0
 Identities = 377/389 (96%)
 Strand = Plus / Plus

                                                                       
Query: 185 tcctcttctctctcttaaaacaaacaaacaacacagaagcaggagactgaagtgaatcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctcttctctctcttaaaacaaacaaacaacacagaagcaggagactgaagtgaatcaa 444

                                                                       
Query: 245 gagaatgttttttgtgggagggcggggcagaggaatggctccaggagggaataacttaca 304
           ||||| ||  |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaaggtggtgggtgggagggcggggcagaggaatggctccaggagggaataacttaca 504

                                                                       
Query: 305 caaaggtcttagtgaagccatatgaaaacttacatctgtagcacatttttttatatagat 364
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 505 caaaggtcttagtgaagccatatgaaaacttacatctgtagtagatttttttatatagat 564

                                                                       
Query: 365 atatttttaattaggtattttcctcatttacatttccaatggtatctcaaaagtccccca 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 565 atatttttaattaggtattttcctcatttacatttccaatggtatcccaaaagtccccca 624

                                                                       
Query: 425 taccctccctcccactccactacccaccaactcccactttttggccctggcgttcccctg 484
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tactctccctcccactcccctacccaccaactcccactttttggccctggcgttcccctg 684

                                                                       
Query: 485 tactggggcatataaagtttgcatgtccaatgggcctctctttccagtgatggcctacta 544
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 685 tactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggccgacta 744

                                        
Query: 545 ggccatcttttgatacatatgcagctaga 573
           |||||||||||||||||||||||||||||
Sbjct: 745 ggccatcttttgatacatatgcagctaga 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)