BAC Information

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BAC

Clone NameMSMg01-490J09
Chromosome15 (Build37)
Map Location 89,394,742 - 89,395,336
singlet/doubletsinglet
Overlap genenone
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3
Downstream geneAcr, Rabl2a, LOC676575, Syt10, Alg10b, Cpne8, EG627342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490J09.T7 (MSMg01no490_j09.b1)MSMg01-490J09.TJ (MSMg01no490_j09.g1)
ACCAG568786AG568787
length748741
length of high quality
(start - end)
64 (257 - 320)626 (84 - 709)
definitionCHROMAT_FILE: MSMg01no490_j09.b1 PHD_FILE: MSMg01no490_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:13 2005CHROMAT_FILE: MSMg01no490_j09.g1 PHD_FILE: MSMg01no490_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGGCCTATAAATTGCGGTCGCTAAANGANNTCCTAATTCGTGATTTG
CGCGGAANNCNGCTATTGTCTGAAACGAGGGCNGNNCANCCCCGAGNNNC
CAGAACAGCANCANACCGGTGANCCACAAAGAGANCGCNAAANCNGAANG
GCGAGGGGGNNCANACCTGGAGAGCGCAGAGACGNAGCNCANNCAAGNCG
GCGGCAGGAGCNACAGACAGCGACNNANGNNCNCACAAGAGANNAGNAGT
GTTTTATTCTTTTTGTTTCTTTCTTTGACAGGATTTCAGTCTGCAGCCCA
GACTATCCTTGAACTTTTTTTTTTTTTTGCCNCANCCNGCCAAGNGCAAG
GCACGGACAATTCAGAACACCGAAGGCAAGACGAGAAGGCNAGGGGCCGN
CACNACCAACNGGGNCGGCCCCCACCCCAAAAAGAAAGNACACGAGACNG
AAGNAGCNGGNCGCAGCGGCAGGGCGCCCAGGGNNCCCGCACAGACAGGA
NCACCGGACACGGGCCNCAGGCNGGGAAGGAAGACCNCAGCCNCAGGCGG
GCAGCACGCGAGCCCAGAAGGNGAACAGAAGGCAGGCCAAGGAAGGAAGC
GGACAGGNGGGGCCCACNCCCGGGCAGGCAAACAGAAGNAGNCCCAGGGA
TCATGTAAAGGNNCNAAAGGAAGAANNNANNCCAAGCGCACACGAGAGGN
NGGACAGCGCNCNCCAAGNCGGCANTATTCAAGAAGAGCACCCATTTC
NAAACACGATGATAAGTGTAGTTCTGGCGGCCGCCTGGATCAAAAATGGG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTCAATTTCAGGACT
CTCAAGTACTGACCATCATCAGGAGCTTTTATCTGAATCACAAAGCTATT
TCTCTTCTCTATGTCAGGAGGGTTCCTCTCTCCTGCATCAGAGGGTAAGC
TCTCTTCTTTCTGAACCTTTACATTAGATAGTAAGTCTTACGTTCTCTAT
ATGAAGGCTAAACAGTCCCTTTTCACCAACCTGAGAGTCAGGAAGTTTCG
GCTTAACCGCCGAGTGAGTATGATAAGGTCTACTGTAAGTGGGTGCCGGG
TTGTACCAGATAAACAACCCAAAGGCTGGGAAAATAGTCAAGAAAGGGGG
GGGGACCAAAAGATGGATCAGCATTGGAAAGGTACCTACCACCAAACCTG
ATTGATGACCTGAAGCCAAGCCCAGAATCCACACGATGGTAGGAGAAGAG
AACCAACTCCCAAAAGTTGTATTCGGACCTCTGCTTGTGCAACACCCACA
CATGCTCAGACACAAAATCATTAAAAATGCAGCAAGGTGTTTTAAAGACA
AGAGATGGCACCAGGATGGGCGATGGCACCAGGATGGGGGATGGTGCCAG
GATGGGGGATGGTGCACAACTTTAACCCTAACACTGCAGGGGGAGGGGCA
GGCAGATCTCAGAGTGAAGTCCAGGTCAGCCAGGGCTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_j09.g1 MSMg01no490_j09.g1 CHROMAT_FILE:
MSMg01no490_j09.g1 PHD_FILE: MSMg01no490_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:13 2005
         (626 letters)



>mm_chr15_89394589_89395619
          Length = 1031

 Score =  990 bits (512), Expect = 0.0
 Identities = 583/632 (92%), Gaps = 43/632 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcaatttcaggactctcaagtactgaccatcatcaggagcttttatctgaatcacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cagtcaatttcaggactctcaagtactgaccatcatcaggagcttttatctgaatcacaa 689

                                                                       
Query: 61  agctatttctcttctctatgtcaggagggttcctctctcctgcatcagagggtaagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agctatttctcttctctatgtcaggagggttcctctctcctgcatcagagggtaagctct 629

                                                                       
Query: 121 cttct-ttctgaacctttacattagatagtaagtcttacgttctctatatgaaggctaaa 179
           ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctt-tattctgaacctttatattagatagtaagtcttacgttctctatatgaaggctaaa 570

                                                                       
Query: 180 cagtcccttttcaccaacctgagagtcaggaagtttcggcttaaccgccgagtgagtatg 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 569 cagtcccttttcaccaacctgagagtcagtaagtttcggcttaaccgccgagtgagtatg 510

                                                                       
Query: 240 ataaggtctactgtaagtgggtgccgggttgtaccagataaacaacccaaaggctgggaa 299
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agaaggtctactgtaagtgggtgccgggttgtaccagataaacaacccaaaggctgggaa 450

                                                                       
Query: 300 aatagtcaagaaa--gggggggggaccaaaagatggatcagcattggaaaggtacctacc 357
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatagtcaagaaagggggggggggaccaaaagatggatcagcattggaaaggtacctacc 390

                                                                       
Query: 358 accaaacctgattgatgacctgaagccaagcccagaatccacacgatggtaggagaagag 417
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 389 accaagcctgattgatgacctgaagccaagcccagaacccacacgatggtaggagaagag 330

                                                                       
Query: 418 aaccaactcccaaaagttgtattcggacctctgcttgtgcaacacccacacatgctcaga 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaccaactcccaaaagttgtattcggacctctgcttgtgcaacacccacacatgctcaga 270

                                                                       
Query: 478 cacaaaatcattaaaaatgcagcaaggtgttttaaaga---caagagatggcaccaggat 534
           ||||||||||||||||||||||||||||||||||||||   ||||||||||||       
Sbjct: 269 cacaaaatcattaaaaatgcagcaaggtgttttaaagatagcaagagatggca------- 217

                                                                       
Query: 535 gggcgatggcaccaggatgggggatggtgccaggatgggggatggtgcacaactttaacc 594
                                        |||||||||||||||||||||||||||||| 
Sbjct: 216 -----------------------------ccaggatgggggatggtgcacaactttaact 186

                                           
Query: 595 ctaacactgcagggggaggggcaggcagatct 626
           ||||||||||||||||||||||||||||||||
Sbjct: 185 ctaacactgcagggggaggggcaggcagatct 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1031
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1021
Effective search space:   628936
Effective search space used:   628936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)