BAC Information

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BAC

Clone NameMSMg01-490K02
Chromosome15 (Build37)
Map Location 6,703,758 - 6,704,003
singlet/doubletsinglet
Overlap gene4921505C17Rik
Upstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511
Downstream geneOsmr, Lifr, Egflam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490K02.T7 (MSMg01no490_k02.b1)MSMg01-490K02.TJ (MSMg01no490_k02.g1)
ACCAG568820AG568821
length749743
length of high quality
(start - end)
326 (327 - 652)245 (339 - 583)
definitionCHROMAT_FILE: MSMg01no490_k02.b1 PHD_FILE: MSMg01no490_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:16 2005CHROMAT_FILE: MSMg01no490_k02.g1 PHD_FILE: MSMg01no490_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAATATGAGCCG
CGGAATTCCTGAACTTTCTAAAACTTTTATCATGAATGGGTGTTTGATCT
TGTCAAATGCTTTTTCTTCATCTAACGAGATGATCATGTGGTTTTTGTCT
TTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAA
CCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTG
TTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTT
GCATCGATATTCATAATATAATTTGTTCTGAAGTTCTCTATCTTTGTTGG
GTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGT
TGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATT
GGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTT
CTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAAC
TTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTC
CAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGA
TTTCTTCAGGATCTGTTGGTATGTCTCCCTTTTCATTTCTGATTTTGTT
NNNCCCCCGATGATGTGGGAGGTCTGGNGGNCGCCTGGTTTTCAAATTGG
GGNNGAACNATAGAAGGTTTCCGAAAACTAGGGATATGNACAAGGAAAAG
AAAACAGCCCTTTTATTTATTTTATGAATAACAATTCCATATGAATATTA
TATGAAGTTAGCATGATAAGAAGTAAGACGTATTCTATAGTGTGTGTGGA
GGGGGAGGTACGTGTGCACATGTCCCAGTGTGTGGAAACCCGAGACCAAT
GTTGGATGTTTTTCTCAATTACTCTCCATTTTATGTTTGAGACAGGGTCG
TTCTCTGAACCTGGAGCTTAGTGACACTTTTTTATTGGCTAGTCAAGAGC
TGCAGGGGTCTGCCTGTCTGTGTCCATACCCTCTCCCCACGAGGAGGATC
CCCAGCCTCGTCCTGAAGTCTGCTCCTAATGCATGGACTTGATTGACCAG
CCCTGGTGGAATTGAAAGGAGAAGAAGAACGCGTAGGAGCACTTGCCCAG
TGGCAAACCGTAGAGATCGTGTAAGACAAAACCAGAAAAGAATACTGGAA
GGAACGAGAAAAGAAAGAAGAGATGAAAGACACTGATAAACAAGTGCCTA
AAAGAATCCCTTCATATAAACGAGACAGGTAAAACAGAAGGGAACGTGAC
TTAAGTATTCCTTAATTGCTCCTAGACTAAAGAAGCTAGGTTTTTAACAT
GTTGAATACATATAACAAGCCTGAGTTATTATCGTAAGATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_k02.g1 MSMg01no490_k02.g1 CHROMAT_FILE:
MSMg01no490_k02.g1 PHD_FILE: MSMg01no490_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:16 2005
         (245 letters)



>mm_chr15_6703558_6704203
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagtcaagagctgcaggggtctgcctgtctgtgt-ccataccctctccccacgaggagg 59
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 446 ctagtcaagagctgcaggggtctgcctgtctgtgtcccataccctctccccacgaggagg 387

                                                                       
Query: 60  atccccagcctcgtcctgaagtctgctcctaatgcatggacttgattgaccagccctggt 119
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 386 atccccagcctcgtcctgaagtttgctcctaatgcatggactttattgaccagccctggt 327

                                                                       
Query: 120 ggaattgaaaggagaagaagaacgcgtaggagcacttgcccagtggcaaaccgtagagat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaattgaaaggagaagaagaacgcgtaggagcacttgcccagtggcaaaccgtagagat 267

                                                                       
Query: 180 cgtgtaagacaaaaccagaaaagaatactggaaggaacgagaaaagaaagaagagatgaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cgtgtaagacaaaaccagaaaagaatactggaaggaacgagaaaagaaagaagagatgaa 207

                 
Query: 240 agacac 245
           ||||||
Sbjct: 206 agacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)