BAC Information

Click to search

BAC

Clone NameMSMg01-491A11
Chromosome15 (Build37)
Map Location 21,072,389 - 21,072,712
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491A11.T7 (MSMg01no491_a11.b1)MSMg01-491A11.TJ (MSMg01no491_a11.g1)
ACCAG569119AG569120
length7261,712
length of high quality
(start - end)
324 (315 - 638)---
definitionCHROMAT_FILE: MSMg01no491_a11.b1 PHD_FILE: MSMg01no491_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:48 2005CHROMAT_FILE: MSMg01no491_a11.g1 PHD_FILE: MSMg01no491_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCCCCC
TTTCTAACATTGTAGGAAAGAACTGATTCTTACAAATTGTAATCTCTCTT
CCAAGTATTCTTCAAAGTGTGCATGCTCTTGCATATAACTATATGTAACA
ATTAAACACTAATTAAAAGATTAAATTGCATGATGTTCTGGCCTTTTGGT
TTAAGAAGCAATACTTTATTTTGTTATATAAAACCTTATGACAAGGTCTA
CTATTTATAAAACAAATAATCTTGTTAATTTGATTTATCTATTTTATTTG
AACATATTTTTATCTCATTTAATATTTCTTTATTTTGTTTTTTAATTATT
TCAAAGATTGGGACATCTGTGTAAATTCATACTGATAATATCACTGTAAA
AGGAGAAGCTAGCAAGAGATAACTGAATACTCAAAAGGAAACAGCTTTCT
TTGACATTTAGCATTCTCACACTGATTTTGTTTGTATTGTAATGCATCTT
TAAGTAATTTTTTTGAGGGGAATTTTCTTGAACTAACCGCCTATGGTTTG
TCTTCAAGGAGACATATAAGGTGATATGTCACCAAACATGTACATTCTCT
TTATTGAAGCAATAAATGGGATATAAATAAGTATAGGAAATAGTCAATCT
TAAGCAATTATAGATGTGAATCATGTGACGTCATTGTGATGAGGCCTCAG
AATTTCGTTTGACATAGGTTTGGGTG
CCGTGCTAGGTTGGTGTGGGGAGCGGAGTGGGTGCCCTCTCCCATATCCT
ACGCGGAGGCGCGGCGGAGCGTAGCGACCGGAGGAGATTCATCCGCGATA
TATATACACNTATNTAGTAAATAANAATGTGACGCCGCTAGTGTATATAG
TGTGCTTGCGCGTATTTGTGATCACTATGTGCTTGATCATTGTGTGCGAC
CCACTCGGGCCCAGCGACCACGTATGTCGGTGCAGTTAGTACGGATATGN
TTGGGCGGCCACCCAGTGACGCGGCCGCGGCGTCTGCACGCGCGCCGCGG
CGACGCGTGACTCAGAGACTCAGCAACGCNCCGCNTCAGTTCTTCTATCA
TCGCACACTCTGTCTNTATAGGGTCTGCAAGAGTTCGTCGCGCTGGCTCC
GCGCTGTTCGTGATCACCNTCGCTCATCTGTTCGTATGCGCGCGCGTGCG
GGCGTGTCGGCGGTGTGGGAGCGCTTGCGGCGTCGAGAGTGAGTAGATCT
GGATGATATGGAGTATGTAAGAGGAGCTCTAGTGTATACGATGTGTTAGA
TAGTGATACTACAGATGAGTAGCATAGGAGCTGGCATCTGCCGCAGACTC
GCGAGTATGTGGTGCTCGGATACATTCATAGGTCTATATTACGCTGTCAT
ATAATGTACACCTCNTANTACATAATCAAGTGCAGTCGCCAGGACTTAGT
TCTGGTCCTCCATTAACTGGTTGATGTGTCCTCATCCACGTGTGAGTGAT
GTGTGAGCAGGCTGATAGGTGTGACGATGCCCTCGGACGCGTGAGATCGT
TCGGAGTGATGTCTATTGCACGTATGTTGANGATGAGGAAGATGTCGAAG
ATGANTAGAAGATTCTCGATCGATATATTGTTCCATACGTACTAACAATC
AATCCTACCTACATATACTTGGCTATTCCTACTACCTGTCTATACCGACT
CGTTGCTANTCGAATGGCGCGNCACGTAGATACTCTCGCGTTCCTCCGTG
AGTGTCTGAGTAGTAGGTACATCNCGCTAAGATCAAACCGTCCACTCGAC
GTCANTTACTTGCATACTATCTCTCACTGATTAGTGTGCATACGCTTCGG
TGTATATAACGGACGCGAGGNCTCGAGGGAGACAGTACACTCGCAGCGTA
CGGACGATNTCGCTCATCGCAGTGCGGAGTGCGTCGGAGTACGGCGGCTG
CGTGCTCGTGTGCGCGATGCNTCTCGCTGCCCTCTGCGACACCACGNGCC
ACACATCTATCGACGCAATANGGCAGAACAGGGTATACGATATGCGACCC
AGACCATCGGTGAGNGCACTGCGCGCGTACTGCAGCTATGACGCGTCCGC
ATATCCCGTACGCCACCACGACACACTATCCTNCTCTGTNTACTGTGGTG
TGTCGAGTCAGCGTATGCCGAGGCTACTCTCATCTCAATACTCATACTCT
ACGTACGGATGCGCGGCGTAGTCGTGACTNTGACTCGGTGTACGTCTCGG
CAGCGTCGAACTATCTCTTGACTGAAGTCCTGCTCTAACACTACTATACG
TGCGACAGCCATCAGTACCGATCGCGTCCGTCGTGCGTGCGTGGCTCGCA
CAACGTGTCCGTGCGCTGTGGAGCAGTTCCCGAGNGGCACACGCTACGCG
TGCGTGCGNATGTGTCGCTAGTATGTATCTGCCCTGCTTCTATCTGTCTA
CTCTACACTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_a11.b1 MSMg01no491_a11.b1 CHROMAT_FILE:
MSMg01no491_a11.b1 PHD_FILE: MSMg01no491_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:48 2005
         (324 letters)



>mm_chr15_21072189_21072912
          Length = 724

 Score =  611 bits (316), Expect = e-179
 Identities = 322/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttaatatttctttattttgttttttaattatttcaaagattgggacatctgtgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttaatatttctttattttgttttttaattatttcaaagattgggacatctgtgtaa 260

                                                                       
Query: 61  attcatactgataatatcactgtaaaaggagaagctagcaagagataactgaatactcaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 attcatactgataatatcactgtaaaaggagtagctagcaagagataactgaatactcaa 320

                                                                       
Query: 121 aaggaaacagctttctttgacatttagcattctcacactgattttgtttgtattgtaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aaggaaacagctttctttgacatttagcattctcacactgattttgtttgtattgcaatg 380

                                                                       
Query: 181 catctttaagtaatttttttgaggggaattttcttgaactaaccgcctatggtttgtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctttaagtaatttttttgaggggaattttcttgaactaaccgcctatggtttgtctt 440

                                                                       
Query: 241 caaggagacatataaggtgatatgtcaccaaacatgtacattctctttattgaagcaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggagacatataaggtgatatgtcaccaaacatgtacattctctttattgaagcaata 500

                                   
Query: 301 aatgggatataaataagtatagga 324
           ||||||||||||||||||||||||
Sbjct: 501 aatgggatataaataagtatagga 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)