BAC Information

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BAC

Clone NameMSMg01-491E11
Chromosome15 (Build37)
Map Location 63,764,111 - 63,764,769
singlet/doubletsinglet
Overlap gene0910001A06Rik
Upstream geneTsg101-ps, EG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik
Downstream geneDdef1, Adcy8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491E11.T7 (MSMg01no491_e11.b1)MSMg01-491E11.TJ (MSMg01no491_e11.g1)
ACCAG569310AG569311
length1,566761
length of high quality
(start - end)
---659 (61 - 719)
definitionCHROMAT_FILE: MSMg01no491_e11.b1 PHD_FILE: MSMg01no491_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:09 2005CHROMAT_FILE: MSMg01no491_e11.g1 PHD_FILE: MSMg01no491_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAAACAATCTCTCCCACAAAGGAGGGAGGTATTTCTCCCCACCAAAGGA
CAGGGGCTGAGAGGACGGCGCGAGGAACTTCTCCCACCCCGCCGCGAGGG
GGGCGCACCTCATATGCCGCTCGGCGCGCGTCCATCGTTCTGGCGAAATA
ACATTTCCCTCCCTAACTATGCTCCTTCCTCACACGTAGCGAGCCGAACG
ACGATGATTAGACCGGGTGTCGTCAGGGATCTTGAAGTCAGGCTAGTGTC
CGAGTCTGTGTGGGGTAGTCGTGTGAGTGTGCAGTTGGGATGCGTCTCGT
TCATGTTGCCTCGGTTTCGGTCTCGCGTTGGCTCACGTGCACACACGAGC
GCGAACGCCAATAACTTAACTGCGCTAGCGCCGCAGTGTCGCATCGAGGT
GTCGGAGTGTCGTTATGTGATAGTGTCTTAGCTCGTAGACGGGCGGAGGC
TGTGTGATTGCCGCCTGTCTTGCGGGTACTACACAAAGATTAGCGCAGTT
AGCNTCCAACTCCGATGAGCTCTCCGGCTGTCATAACCCACTATCGCGTG
ATCTGTATTCCGCCGCATCGCCTTCGCCGGTAATNGACGCACGACGGGTC
GTGACACAGTACGGTATATCAGCACACTACGCCGCACCTCTATCTCTCTT
TGTTCTCCTCCTACAACTACGATCCCATGCACCCCATCCGCACAGTACGG
ACAAACATGACGACGACGGCACGTGATTGTTCTNCGCACTCTCCTCTGAT
CCATCTAGCGAGTCGCGCTGGCGTCGCCGTGAGACGCACAGTCTGTGCGG
CGGCGGATAGCACGAGCGCACATCGCTCTAAATTATGCATAGATGAGACG
ATATCACAATGATATATGTCCACATTAGTCAGCTATATAAGCCAGCGCGA
ACNCGCGCGCGCGTGTTGCACCCGCGCGCAACCGCGCTGCATGGGCGCGT
ATTACAGCGACATTCCTCCGTTGCCGTACATGACGCGCGCGGAGATGAGT
CGGTGCGANACGTACGATAGCGGATATTCGCATCGCGTACGCCCGCATTC
CGCCGATCACGATGATATCCTTCTCGCTCTCACTACCCTTCTCACACTTT
ATCCGGAGCTATCTCATTACATTCATCTGCCCACGCNGNGTGACATACTT
ATCTTATGCANGACTGTGCTGCCTCTGCGTCGCGCGTTCAATGCGCATTC
GCGCTACCTTCCACGAGCCTCGCGCTCTCGCCGATCATACCTCACTACTC
GCTCCACCTATAGTACATATAACCCTATACTCCGATATCTATACTCACAT
ACACGACTTATGACGTCTCGCGCTGTAACGTGAGCCTGTGCGAGCACGAT
CGACGTGACGTACCGCAGGAACAGTACTCTAGCTATACATATAACACACT
ACGATCTCCGGCGTTACCTGTCGACTACGATGAGTCACGTTTACTACTCG
TTCTGTGAGTCACTGGCCACGACTGTCTGTGTCGTCGCTCACCACCTAGT
GCTCGATATGTAACGGATNTGTGATACGGATACAACTGTGCATCTCGAGA
CCTGACGCACGTGTGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATTTTCAGTTTGGACTTATACGCTTGTTCAAAATGTACCT
ACCTGGAAAGACAATCATTTTAAGTTGGTATATAGACAATATATGTTAAA
GAAATTTGAACAACTGTTTAGTTTATTTCAAATAAGCTTTAAAAGTAAAA
ATCCTATCTGTACTCTTTAATAAAGGTGAAGAGACAGGTAAGTTTCATCA
GACACCTGGCATGAACTGTATGTTTCTCAGCAATCACTTCCAAACTGTTC
TCACTGAAGAGATACTGTAGTGTCTGGTTCATAATGAGTGTTTAGTAAAT
AACTGGAGGGAAGTTAGGTTGTGACACTGGAAAGGAGAAGTCCACAGAGT
AGTGGTTCCTTCCTAATCCTGCAACCCTTTCATACAATTCCTCTTGTTGT
GATCCTCCCCAAACAATACCATTATTTTCACTGCTACTTCATAAGCAATT
TTGCTACTGTTACAAATCATAATGTAAGTATTTTTGTAGAGAGGTTCACC
AAAGAGATCACAACTCATAGGTTGAGAACCACTGTCAAAAAGCATTATCT
AATAAAATGGTAGTGATGAGGCAACTCTTCTGTTTTGAGATTGACAAAGC
TTATATGGCCACATATAACCCTATTCAATATCAGGAAATAGATGTCATAT
ATTTCTATGGCTTCTTCTCCCTTTCCTTTACTGGGAATAACTAAGGAACA
TGGAATAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_e11.g1 MSMg01no491_e11.g1 CHROMAT_FILE:
MSMg01no491_e11.g1 PHD_FILE: MSMg01no491_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:09 2005
         (659 letters)



>mm_chr15_63763911_63764969
          Length = 1059

 Score = 1259 bits (651), Expect = 0.0
 Identities = 657/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttcagtttggacttatacgcttgttcaaaatgtacctacctggaaagacaatcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttcagtttggacttatacgcttgttcaaaatgtacctacctggaaagacaatcattt 260

                                                                       
Query: 61  taagttggtatatagacaatatatgttaaagaaatttgaacaactgtttagtttatttca 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 taagttggtatatagacaatatatgttaaagaaatttgaacaactgttcagtttatttca 320

                                                                       
Query: 121 aataagctttaaaagtaaaaatcctatctgtactctttaataaaggtgaagagacaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataagctttaaaagtaaaaatcctatctgtactctttaataaaggtgaagagacaggta 380

                                                                       
Query: 181 agtttcatcagacacctggcatgaactgtatgtttctcagcaatcacttccaaactgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttcatcagacacctggcatgaactgtatgtttctcagcaatcacttccaaactgttc 440

                                                                       
Query: 241 tcactgaagagatactgtagtgtctggttcataatgagtgtttagtaaataactggaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactgaagagatactgtagtgtctggttcataatgagtgtttagtaaataactggaggg 500

                                                                       
Query: 301 aagttaggttgtgacactggaaaggagaagtccacagagtagtggttccttcctaatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttaggttgtgacactggaaaggagaagtccacagagtagtggttccttcctaatcct 560

                                                                       
Query: 361 gcaaccctttcatacaattcctcttgttgtgatcctccccaaacaataccattattttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaccctttcatacaattcctcttgttgtgatcctccccaaacaataccattattttca 620

                                                                       
Query: 421 ctgctacttcataagcaattttgctactgttacaaatcataatgtaagtatttttgtaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgctacttcataagcaattttgctactgttacaaatcataatgtaagtatttttgtaga 680

                                                                       
Query: 481 gaggttcaccaaagagatcacaactcataggttgagaaccactgtcaaaaagcattatct 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggttcgccaaagagatcacaactcataggttgagaaccactgtcaaaaagcattatct 740

                                                                       
Query: 541 aataaaatggtagtgatgaggcaactcttctgttttgagattgacaaagcttatatggcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aataaaatggtagtgatgaggcaactcttctgttttgagattgacaaagcttatatggcc 800

                                                                      
Query: 601 acatataaccctattcaatatcaggaaatagatgtcatatatttctatggcttcttctc 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acatataaccctattcaatatcaggaaatagatgtcatatatttctatggcttcttctc 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)