BAC Information

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BAC

Clone NameMSMg01-491G11
Chromosome15 (Build37)
Map Location 91,144,461 - 91,145,095
singlet/doubletsinglet
Overlap geneSlc2a13
Upstream geneCpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126
Downstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491G11.T7 (MSMg01no491_g11.b1)MSMg01-491G11.TJ (MSMg01no491_g11.g1)
ACCAG569406AG569407
length1,477738
length of high quality
(start - end)
---629 (69 - 697)
definitionCHROMAT_FILE: MSMg01no491_g11.b1 PHD_FILE: MSMg01no491_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:18 2005CHROMAT_FILE: MSMg01no491_g11.g1 PHD_FILE: MSMg01no491_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGAGGAGAGGGAGCATGTGGAGCAGAGTTGCTTCTCTCATATCTCCAGTA
AGGATGGGCGGGCGGGAATGGGCCTTGTATTCTTCTACTCCCTGAAATAT
ATGTGAGACATAGATAGCACGTGCATCTCGCTACTTGTATCGGTCATACA
CTACTATATTNTACACTATAGTTCATATATTCGCACCCGATGTATTCACT
ACGGCGGATCGTTCTCTACTTGCGCTATCTCGTACGTTTATAGTCTCTCA
CGACTCATGTGGTGAANGTCAATCGTGTGATATTGTGCAGCTCGTTCCTT
GCCATCACTNAGTTAATCTCATCTCGCGCNTAGACATGTACGCATTGGGG
NTATAGTACTAGTTCTTATCTTATCGGCTGTCACTACTGGTCGGGCACTG
TACGTGATGTTCTCTTGTACTGTTGCGCCGCTCATGTGACATAGCTCTAG
ATAGCGTGGAGGACGAAGATCTCACGATGTTATTGTCTACTAGTCTATTC
AGCACGCGTACCCACGATGTCTGCGTATACATGTCGTGTTCTTGTTATTG
TCGTGCGCGTTTATTCGTACAACAGATTTGGGGNTCTCCTCCTGGTCGCG
CCCCACATTACATGCGTGCGAGCGCTTAGGTAGGAGTCTACTGCCGATGT
ATACGGCATCACAGACTATTGGATACCTCTAGGTGTACACCGTTGTCTGC
AGCTACGCTGAGTATACGACCACGATCCCTACTCTATGTTGTTGCATCTA
GCTCTAGATGAAGGCACACAGCGGCCGTCATCTAAGCGCGCGCGAAGAGC
GATGCCATTGCCTCAGCTATCGTCTGTTGAAGTTAGCTGAGTGACCGAAC
GCATGATGAGACTAGTACAAGACTCGTGTACATGAACAGTTACCTGCGCG
GTGTCACGTGGCGTGTTGTCCGTCGGCGCNATGACCTCGTCTGCACGTGA
TAACGACGGATGTTGACTCCTGTGTTGAACTAGCGCCTGAAGCATGTCGC
TATATGGAACGTCTGCGCACGCGAGCGCGTTCTCGAGCGCTCGACGCTTG
GNAGTCTCCGCGCGACTGACTCTCTGTGTAGTATTTGGTGACGCGTGTGT
GCGGATTGATCGGTAGCGCGCTATGACNCAGCTGTCGCTATCACTGTGCC
ATTGGATCTAGTCTATCGGAGCACGCGTGTGCTAACTCACTTTCTCGCTG
CGAGTTGTCGTGTTGCGTACTTGTATGCACCGCTAGCGTCACCGACTCTG
TGCTATCTCACATCGTATACGCCTCNGAGTACTTTCTGCGCGTCCATACA
GACATGCAGTGTGTAATATACGTCTTGATACACTAATCGTAGTTGGACGA
CAACTGATACTATCTGTCGCGCACGACGCGTGTGCTCTGTATANCTGTGT
TGTCGACGTANCGTGGTCAACTGCGAGACGCCGTATCGTATCGACTANCG
CGATGNCGTGTACTGCGACGTAGGTGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTCCATCAGAACTTTGCCTTCTCATCCCA
AGCCATTCATTCATGTTCCTCCCTACCTAAAATTCTTCCCGACAGCGATA
GTATGCAAACCCATATTATGACCTTCAGGAACATCTTCAGAATAATTCCG
CCTATCTTTCTATAGCTGCTAATACTTCCTTTGTGGTCCTTGATTTTTTA
TTTTATTTTTTTTTATTTATTAGCTTGCTCTTGTAACTTAGGATTGCTGT
TTCCACAGCCGAATCTAATATATCTTGCTTTAAACAGCAGTGGAATTCAG
TGTGTCTTTATCAGCCAAGCAAGGGCAAATTATGCCCAAGTAACAAAGTC
TCAGATTTCACTGTGATTTACACAAAGCATCCAGCTGAGAGCCCCTCCTC
TCTTCACGCTATAACCACAGTACCTGCTCTATGGGGCCACGGCCAACTTT
AGAGGAGGATGAGAGAGCGTATGTGAAATTCTGGCGAAAACCTTGGTCTT
AAAACTTTGGCTCAGAAATGACACAGATTGCTTCCGCTTTCTTTTACTTG
GCCAGAGTAAACCATGTGGATAAGGCTGAATTTTAAAAAAAAGAAAAAAT
GTTTCCCAGGGAGCAGCAGCAGCTGTTTTTAGCAATAATAAAATCATCAC
ACTTGCCAGGAACTGGAGAGAGCTGTTATGGACGGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_g11.g1 MSMg01no491_g11.g1 CHROMAT_FILE:
MSMg01no491_g11.g1 PHD_FILE: MSMg01no491_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:18 2005
         (629 letters)



>mm_chr15_91144264_91145295
          Length = 1032

 Score = 1081 bits (559), Expect = 0.0
 Identities = 614/635 (96%), Gaps = 6/635 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtccatcagaactttgccttctcatcccaagccattcattcatgttcctccctacct 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tttgttcatcagaactttgccttctcatcccaagccattcattcatgttcctccctacct 257

                                                                       
Query: 61  aaaattcttcccgacagcgatagtatgcaaacccatattatgaccttcaggaacatcttc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaattcttcccgacagcaatagtatgcaaacccatattatgaccttcaggaacatcttc 317

                                                                       
Query: 121 agaataattccgcctatctttctatagctgctaatacttcctttgtggtccttgattttt 180
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 318 agaataattccgcctatctttctataactgctaatacttcctttgcggtccttgattttt 377

                                                                       
Query: 181 tattttatt---tttttttatttattagcttgctcttgtaacttaggattgctgtttcca 237
           |||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 378 tattttattttatttttttatttattagcttgctcttgtaactcaggattgctgtttcca 437

                                                                       
Query: 238 cagccgaatctaatatatcttgctttaaacagcagtggaattcagtgtgtctttatcagc 297
           |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 438 cagcagaatctaacatatcttgctttaaacagcagtggaattcagtgcgtctttatcagc 497

                                                                       
Query: 298 caagcaagggcaaattatgcccaagtaacaaagtctcagatttcactgtgatttacacaa 357
           ||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 498 caagcaagggcaaattatgcccaagtaacaaagtctcggattccacggtgatttacacaa 557

                                                                       
Query: 358 agcatccagctgagagcccctcctctcttcacgctataaccacagtacctgctctatggg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agcatccagctgagagcccctcctctcttcacgctataaccacagtacctgctctatggg 617

                                                                       
Query: 418 gccacggccaactttagaggaggatgagagagcgtatgtgaaattctggcgaaaaccttg 477
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 618 gccacggccaactttagaggaggatgagaaagcgtatgtgaaattctggcgaaaaccttg 677

                                                                       
Query: 478 gtcttaaaactttggctcagaaatgacacagattgcttccgctttcttttacttggccag 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtcttaaaactttggctcagaaatgacacagattgcttccgctttcttttacttggccag 737

                                                                       
Query: 538 agtaaaccatgtggataaggctgaattttaaaaaaaagaaaaaa---tgtttcccaggga 594
           |||||| ||||||||||||||||||||| |||||||| ||||||   |||||||||||||
Sbjct: 738 agtaaatcatgtggataaggctgaatttaaaaaaaaaaaaaaaaaaatgtttcccaggga 797

                                              
Query: 595 gcagcagcagctgtttttagcaataataaaatcat 629
           |||||||||||||||||||||||||||||||||||
Sbjct: 798 gcagcagcagctgtttttagcaataataaaatcat 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1032
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1022
Effective search space:   632618
Effective search space used:   632618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)