BAC Information

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BAC

Clone NameMSMg01-492P16
Chromosome15 (Build37)
Map Location 76,091,612 - 76,091,968
singlet/doubletsinglet
Overlap genenone
Upstream geneLy6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina
Downstream geneSpatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492P16.T7 (MSMg01no492_p16.b1)MSMg01-492P16.TJ (MSMg01no492_p16.g1)
ACCAG570607AG570608
length7231,114
length of high quality
(start - end)		361 (213 - 573)---
definitionCHROMAT_FILE: MSMg01no492_p16.b1 PHD_FILE: MSMg01no492_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:21 2005CHROMAT_FILE: MSMg01no492_p16.g1 PHD_FILE: MSMg01no492_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATTCA
GTTGTTCTCTGCAGTTCAGAATAGCATCAAACTCAAAGCAATCCTCCTGC
CTCCTGAATGTGGGGATTATACCTGTGAGCTCCCTAGACTGGGTTGTAAT
CTTGGGAAGGTAGATGGTGTTCAGGAGAGTCAGGGCATCTGTATATCTAT
GCAAGGCTCATGGCTAGGAAGAAAGGCCTTAGTGAAAATCTATGGTGGTG
CAAACCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGTTGGATCTCTGTG
AGTTTGATGTCAACCGAGTCTATGGAGTTAGCTCTAGTACAGCCAGGGCT
ACGAAGCAACTCTGTCTCAAAACACCAAGAAAGGTAAGAAAATCTCCAGA
GGTCTTGGCTAGAAGCAGAGATTTGGGGGTATAAGACCTAGATCTCACCC
CCCAAATTATCCCTTGTAGAAGGGCTGGGCCCAAATGCAAAGACCAGGAA
GCTCTCTGAGGCTTTGGCGGCTTGAAAATGTCATCATTGCTGGTTCCATA
GCTGCTTTAAAACAACAACAACAACAACTACTAACTAAACAAAACTAAAC
AAAAAACAAAAGTATGAATGATCAGCTCTGGAAAGCTAGCATGGCACAGG
GCTCAATTCTACCCACCAGGTATAGCACGCTGGTAGAAACCCGCTGGAAG
AATGGGGTTGGGGGTTCCAGAAG

GTTAGCGGGAAAGGCGCCGGGGGGAAGTCCAAGGNTTACCTTGACGGCGC
CGNGGNGGNNNNNNGNGNGTTAATCAAGGAGGGGAGGGGGGNGGNNGNGN
TAGGGGANGCGGANGCGNAGNNGGAAAGGAAAGGGTTTGTCTGCCCAAGA
AATAAGATGGGGAGTGGTCTCTCCCTATATTGATCCTCGGATTTCTACTC
TCTCGGGTAGGGGGGCATGGGTCGCGTATCAGACGTCCTTTAGGCGGAGC
TCACTACTGTCTTTTATCAGTAGTTCGGGAGAGGCGGAGGGGGAGGATAT
TATTTTCTTTCTGTGCTACCTGTGTTATTCACGTTCCGTTGGGTAACCCC
ACGGCAAGTTCGCGCCAGACTTCGGAAGATAAGAGCCGGCAGGGGCTCTT
TTTTTTTGTATTTGAGAACCAGGCTCTGGATGCCACACCCGCCAATTTCA
GCGCCGACGTCTTCTTTTGTTACCTGGCACCACACGACAACGCCTCCGCG
GTTGCCCACGCGTGTAAACCTCGAGAATATCTTCGGGTACGTGCCGATAA
GACGGAACGACCCCAGCCTTATTGACCTCTGGTTAAATTCGCTGGCCGGC
GGCGATTGTACCTGACGGGCAAAACTTTCGCGCGAGATAACCCGGTCGTC
TAGTACCCGTAAGATAGACCTCTCGTCACGTTTTCTATCTCGCCACGCGC
ACGCGGCTGTAATCCCGTAGCTAGATCACATCGCTTCGCGCTCTGAACTG
CTCTGTTACGCCTGTCCGCTCCCCACCACCTATCGCCTCGCCACGTTACG
CCGTGCGCTCCTACGCGTGTACCCGTCCGTGCGAGACGTCTATTGACCGA
TCTTGCTCCACATTCCGTTGACATCCCATATTCGGACAGTCTCTACGCCC
GCCATTATATATCTTAACTGGTGTCTCCTTAGTATCGCTTAACACCTCTA
TATGTTGCCTGTCTACCCACTTCCTCACGCTTCACCCACTATATTCGGTC
CGCGCCCAGTGCCATATCTTATCCTGCCTAACCTCGCTGTATTATACGCA
TACATCGTCTTCACGGCGTTGCATATCCCATCTCCCGCTGATAACCGCCA
CGTCGTATTCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_p16.b1 MSMg01no492_p16.b1 CHROMAT_FILE:
MSMg01no492_p16.b1 PHD_FILE: MSMg01no492_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:21 2005
         (361 letters)



>mm_chr15_76091244_76092004
          Length = 761

 Score =  615 bits (318), Expect = e-180
 Identities = 348/358 (97%), Gaps = 2/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctaggaagaaaggccttagtgaaaatctatggtggtgcaaacctttaatcccagcactc 60
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 725 gctaggaagaaaggccttagtgaaaatctatggtggtgcatacccttaatcccagcactc 666

                                                                       
Query: 61  tggaggcagaggcagttggatctctgtgagtttgatgtcaacc-gagtctatggagttag 119
           ||||||||||||||| ||||||||| ||||||||| | ||||| | ||||||||||||||
Sbjct: 665 tggaggcagaggcaggtggatctctatgagtttgaggccaaccag-gtctatggagttag 607

                                                                       
Query: 120 ctctagtacagccagggctacgaagcaactctgtctcaaaacaccaagaaaggtaagaaa 179
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctctaggacagccagggctacgaagcaactctgtctcaaaacaccaagaaaggtaagaaa 547

                                                                       
Query: 180 atctccagaggtcttggctagaagcagagatttgggggtataagacctagatctcacccc 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 546 atctccagaggtcttggctagaagcagagatttgggggtataagacctggatctcacccc 487

                                                                       
Query: 240 ccaaattatcccttgtagaagggctgggcccaaatgcaaagaccaggaagctctctgagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccaaattatcccttgtagaagggctgggcccaaatgcaaagaccaggaagctctctgagg 427

                                                                     
Query: 300 ctttggcggcttgaaaatgtcatcattgctggttccatagctgctttaaaacaacaac 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctttggcggcttgaaaatgtcatcattgctggttccatagctgctttaaaacaacaac 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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