BAC Information

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BAC

Clone NameMSMg01-494D19
Chromosome15 (Build37)
Map Location 89,470,949 - 89,471,431
singlet/doubletsinglet
Overlap genenone
Upstream geneBrd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a
Downstream geneLOC676575, Syt10, Alg10b, Cpne8, EG627342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494D19.T7 (MSMg01no494_d19.b1)MSMg01-494D19.TJ (MSMg01no494_d19.g1)
ACCAG571565AG571566
length743745
length of high quality
(start - end)
614 (55 - 668)483 (59 - 541)
definitionCHROMAT_FILE: MSMg01no494_d19.b1 PHD_FILE: MSMg01no494_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:02 2005CHROMAT_FILE: MSMg01no494_d19.g1 PHD_FILE: MSMg01no494_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGATCTTCG
GCCCACTGTCACATTTCTTTGGCTGTGAAGTGAGTTCCTTGGTCAGACTC
AATACTGTGTAGAATACCATAACAGTGGATGCGACATTCTGTAATTCCAC
AGATGGTAGTTTTGTCAGAAATATTACATGCAGAAAAGGCAAATCCATAA
CCAGAATAAGTATCTACTCCACTAAAGACACAGTGTTGTTCTTTCCACAG
AGGAAATGGCATAATGTAGTCAACCTGCCATCATGTCACCCTGAGAAGGG
GACATATCAGGGTCTCAGTCTCGGTCTCTGCTGTTGGCCTACCTGCCACT
CAGCAGCAGCAGCAGCTGTAGCCAGGTGGGCTTTATGAGTGTGAGTCCAC
ACTGTCAAGTCCATGTATAACCTCCATCTTGGCCACCATGGCCCACTTTG
TTCATGGGACCATTGTACAATGGCATGGGTGGTTAGGGAAAGGAACTGAC
TATCCACAGAATGGGTCATCTTATCTATTTGGTTGTTGAACACCTCGGCT
GAAGAACACAAGTATATTCACACCCTTGGCCCATTTGGAGGGATGTATCC
ATAAGTCTCTTCCAATCACTTTTCATATCATGGCCTTTCTGAGTCCCTGA
TTATCCACCGAGTCCATTGGATCCAGGCCATGAATAAGTGAACAGTCGAA
CATCTGTCCAGTTCTTCTTCCACACAGCGTGTAAGACCATGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCAGCTCTACCTGCATCATGCTTGCTTAGATGCTGCCCTGCT
CCCACCTTGATGATGACAGACTGAACCTCTGAACCTGTAAGCCAGCCCTA
ATTAAATGTAGTCTTTTATAAGACTTGTCTTAGTCATGGTGTCTGTTCAT
AGCAGTAAAACCCTAACTAAGACAAGGTCCATATCCTCCCTGTTAACCTT
TCCTTTCCACTGCCTGTGGGTGAGTGGTGGGCTAGAAGGGAGGTTAGAGA
ATTTAAGTACCCTTAAAGTAGGTTTTAAAACATATAATCCTACACTTTTA
TCTTATCCTCAGAGGTTGAAGCCTTTCTTTGTTCCTGTTGCCCCTCTGGG
CTTTCCCATGCACTTACTCTGAGGCACGTGTGCTGTCCAGGGATGTGGGG
TGGAGGAAAAGGAGAAAGTATGTGAAGAGGATCTGGAGTCCACTTGAGAG
GCTTTTAACATTTCCTCTTCACTCACTAAGGAGGGAATTGAAAGCACCAA
GGTTTGGTCGGGAGCTTTGGAGGGAAGATGAAATTCAGTCATGCTTTTGA
TGTAATTCTCGGATCACTCCTATTTTTTCCCTTAAAGAAGTCCAGGATGC
ACAAATAAAGGGATATCATTCCATGTATTCAATGTGACCTACATATATAT
GTGTGCGCGTGTTTCTGCGTGCTGCCTCTTCCCCTTTTTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_d19.g1 MSMg01no494_d19.g1 CHROMAT_FILE:
MSMg01no494_d19.g1 PHD_FILE: MSMg01no494_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:02 2005
         (483 letters)



>mm_chr15_89470749_89471631
          Length = 883

 Score =  880 bits (455), Expect = 0.0
 Identities = 476/483 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctctacctgcatcatgcttgcttagatgctgccctgctcccaccttgatgatgaca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctctacctgcatcatgcttgcctagatgctgccctgctcccaccttgatgatgaca 260

                                                                       
Query: 61  gactgaacctctgaacctgtaagccagccctaattaaatgtagtcttttataagacttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgaacctctgaacctgtaagccagccctaattaaatgtagtcttttataagacttgt 320

                                                                       
Query: 121 cttagtcatggtgtctgttcatagcagtaaaaccctaactaagacaaggtccatatcctc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagtcatggtgtctgttcatggcagtaaaaccctaactaagacaaggtccatatcctc 380

                                                                       
Query: 181 cctgttaacctttcctttccactgcctgtgggtgagtggtgggctagaagggaggttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgttaacctttcctttccactgcctgtgggtgagtggtgggctagaagggaggttaga 440

                                                                       
Query: 241 gaatttaagtacccttaaagtaggttttaaaacatataatcctacacttttatcttatcc 300
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatttaactacccttaaagtaggttttaaaacatataatcctacacttttatcttatcc 500

                                                                       
Query: 301 tcagaggttgaagcctttctttgttcctgttgcccctctgggctttcccatgcacttact 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagaggttgaagcctttctttgtccctgttgcccctctgggctttcccatgcacttact 560

                                                                       
Query: 361 ctgaggcacgtgtgctgtccagggatgtggggtggaggaaaaggagaaagtatgtgaaga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 ctgaggcacgtgtgctgtccagggatgtggggtggaggaaaaggagaaagtaggtgaaga 620

                                                                       
Query: 421 ggatctggagtccacttgagaggcttttaacatttcctcttcactcactaaggagggaat 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggatctggagtccacttaagaggcttttaacatttcctcttcactcactaaggagggaat 680

              
Query: 481 tga 483
           |||
Sbjct: 681 tga 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)