Query= MSMg01no495_l05.b1 MSMg01no495_l05.b1 CHROMAT_FILE:
MSMg01no495_l05.b1 PHD_FILE: MSMg01no495_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:49 2005
(288 letters)
>mm_chr15_9999483_10000170
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Minus
Query: 1 ataactgctccacccttactcttcctgggacttctgattctctcagcttttatactcaca 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ataactgctccacccaaactcttcctgggacttctgattctctcagcttttatactcaca 429
Query: 61 tgtgactatcatccacgtattacatcaaaatttataaactgcaccttcaccagggagtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtgactatcatccacgtattacatcaaaatttataaactgcaccttcaccagggagtat 369
Query: 121 attggtctgagtcataaatctcaccaaaatcttacctccaattctaaccatatctaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attggtctgagtcataaatctcaccaaaatcttacctccaattctaaccatatctaaaat 309
Query: 181 gtctgctctcttgggatagtatagtcagagacgtaagagaaccgaaagcccagcagccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtctgctctcttgggatagtatagtcagagacgtaagagaaccgaaagcccagcagccag 249
Query: 241 ggccaaggtacatcctcctgatgataccattccacttggctttgcctc 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggccaaggtacatcctcctgatgataccattccacttggctttgcctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no495_l05.g1 MSMg01no495_l05.g1 CHROMAT_FILE:
MSMg01no495_l05.g1 PHD_FILE: MSMg01no495_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:49 2005
(243 letters)
>mm_chr15_9834376_9835017
Length = 642
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 1 tccttactttggttgtctaagaaaagatttacttatttattgagttctcacttttaatgg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttactttggttgtctaagaaaatatttacttatttattgagttctcacttttaatgg 260
Query: 61 gtaagtttacatgatgtaagatttttaaagttaacattccttttatgttatatgtttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagtttacatgatgtaagatttttaaagttaacattccttttatgttatatgtttctt 320
Query: 121 tcagtttgtgttttatttcagttcctaatgagaagctcactctatattttatttcatcta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tcagtttgtgttttatttcagttcctaatgagaagctcactctatattttatttcatc-a 379
Query: 181 ctcacccctccagtaactcctatgaccctgactgcctcttggatttatgacctataaata 240
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 380 ctcacccctccagtaactcctatgaccctgactgcctctcgtatttatgacctataaata 439
Query: 241 aca 243
|||
Sbjct: 440 aca 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space: 148122
Effective search space used: 148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
