BAC Information

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BAC

Clone NameMSMg01-496H04
Chromosome15 (Build37)
Map Location 47,521,543 - 47,522,234
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496H04.T7 (MSMg01no496_h04.b1)MSMg01-496H04.TJ (MSMg01no496_h04.g1)
ACCAG573251AG573252
length7461,118
length of high quality
(start - end)		695 (52 - 746)---
definitionCHROMAT_FILE: MSMg01no496_h04.b1 PHD_FILE: MSMg01no496_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:47 2005CHROMAT_FILE: MSMg01no496_h04.g1 PHD_FILE: MSMg01no496_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACTTTCTCATGCATCCACAGTCTCTTGTACTCAGTAAA
TAATAAATGAAAAATCCCCCAAGCCAATCCTTAAAACTTAAATAAATTTT
AAAATAACTTACAATTATTGAATTTCATAACATTATTTAGTGTTATTTCT
TTATTTTTTTGTTTCTAATGTACTCAGTGAGAAATTCAAAAAATCAATCC
ATAAAAATACACAAATTATGATATAATTATAATGATTAAATTGTATAACA
TTATCCACTGTTATTTTTGTTCTTAATTCATAAGTTAAATTATTAAGTTA
ATTGATTAATAAATTAAATTTTATTCATATAAATTTAATTCATAGCTTAA
AATTTAAATGTATGTATAGTAAAAGTCTTATTTATAGGGTACAGAGCAAA
CTGTAGCTTCAAGTAGCAACTGTGATTTAAATGTTCCCCCAAGTGATAGA
AGAAGACTAGTAATTCTCATTACATATTGTTTTACATAATAAGAATATCT
TAAGTAAAGAATAAGTTCATTGTGTAGTAGATAATATATTTATCAGGTCT
GTAACATCTTTTATATTAAAAATAGATTTTTTTCATGTAAAATATTCCAA
ATAAAGTTTCTCCTCCTTCTTCTCCTATAAGATCCTCCCCACTTCTTCTC
ACACCCAAATCTAATCCCTTCTGGTGATAATTAGGAAATAAACACG

AAAAGAACGAAGGAAANGNGGGGTGAGGGGGGNGGGTGNNNAAAATCCCG
GACCTCGANNNGNGNGNANGNNGNGNGAAATTCANGTGGCATCCGCANGG
GGNNNGNGGNNNGGNNNNANNNNNNANAANNCGANCGGAAAAGAGGGGCT
TTTTTCCCCACAAAGATATAAAAACTGCGCCCCATGGCATAATCCCAGAC
TTGCCGTCTACTTTTTGAGATACGTGGCGGCGGGCGAGTTACACTATTCT
CGCGGTCTATGATGGGGGACAGAGAATCAATCATTTATAGCATACACCGT
CGTGGTATCGGCGGCGGGATGCATAAAGTTATATTTTTTTATATTGAGGA
CGATGGTAAGCGGGTCCACATTCGGTACGTATATCGATGAGAACCACGCG
AAGAAAGGGACCAANCCGACGGGCGTGTTTTTATTGTTTTTTGACNAACA
CAACGGCAGCAACAGCAGGAGAAAAGACGCAAGAAATTTTATCTTCCCCA
CATAGATATAGGCAGAATAGAGAGTGCGGTCGGCATCAGCAGATTATGAA
TGAGTGAGGAGTGTGGTGCCCCACANCCCAACTAATAAGGCTGGGATGGG
TAATAAAGGTGTATCACCACCTTCCATAATTAACCCGACAAATCGACGCA
ACAAGCGTCGCGAGATATGCATATAATACTTATATTATACCAGGCAGCCC
ATCGCCATGCCATCCAATACGTACGGCTACCAGCGGAGTATTGTCTGCCG
TCTCTCTCGGGACAGACCTACAGGCAAGAACGACGANACTAGTGTAGGCC
ATTGAGATCGTTAGTTATCGCAAGGCACACCACTGATCTTCTATGACATT
AGGTAAGACGGCGACAGATAAGATGCGTCACGATTTCGGTAATCTACGCG
AATCGTCTGTTTAGCCTCGCATTGCGACAGCCATACTATATCCGATCAAT
AATACATGATGATTGTTCTTTTTAGAGATAGACGAGCAGGGTAACAGGTT
GATGCAAATACAATCGCTACGGCAGATCCGTCTCCGCCGTATATATTACC
CCTAGTCACAATAGGAACGCGAGTAAACANTATAAATAATCTGTGGAGAG
TCGTAGAGGTAATTAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_h04.b1 MSMg01no496_h04.b1 CHROMAT_FILE:
MSMg01no496_h04.b1 PHD_FILE: MSMg01no496_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:47 2005
         (695 letters)



>mm_chr15_47521140_47522234
          Length = 1095

 Score = 1299 bits (672), Expect = 0.0
 Identities = 687/692 (99%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattccactttctcatgcatccacagtctcttgtactcagtaaataataaatgaaaaa 63
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 ggaattccactgtctcatgcatccacagtctcttgtactcagtaaataataaatgaaaaa 1036

                                                                        
Query: 64   tcccccaagccaatccttaaaacttaaataaattttaaaataacttacaattattgaatt 123
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 tcccccaagccaatccataaaacttaaataaattttaaaataacttacaattattgaatt 976

                                                                        
Query: 124  tcataacattatttagtgttatttctttatttttttgtttctaatgtactcagtgagaaa 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  tcataacattatttagtgttatttctttatttttttgtttctaatgtactcagtgagaaa 916

                                                                        
Query: 184  ttcaaaaaatcaatccataaaaatacacaaattatgatataattataatgattaaattgt 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  ttcaaaaaatcaatccataaaaatacacaaattatgatataattataatgattaaattgt 856

                                                                        
Query: 244  ataacattatccactgttatttttgttcttaattcataagttaaattattaagttaattg 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  ataacattatccactgttatttttgttcttaattcataagttaaattattaagttaattg 796

                                                                        
Query: 304  attaataaattaaattttattcatataaatttaattcatagcttaaaatttaaatgtatg 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  attaataaattaaattttattcatataaatttaattcatagcttaaaatttaaatgtatg 736

                                                                        
Query: 364  tatagtaaaagtcttatttatagggtacagagcaaactgtagcttcaagtagcaactgtg 423
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  catagtaaaagtcttatttatagggtacagagcaaactgtagcttcaagtagcaactgtg 676

                                                                        
Query: 424  atttaaatgttcccccaagtgatagaagaagactagtaattctcattacatattgtttta 483
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  atttaaatattcccccaagtgatagaagaagactagtaattctcattacatattgtttta 616

                                                                        
Query: 484  cataataagaatatcttaagtaaagaataagttcattgtgtagtagataatatatttatc 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  cataataagaatatcttaagtaaagaataagttcattgtgtagtagataatatatttatc 556

                                                                        
Query: 544  aggtctgtaacatcttttatattaaaaatagatttttttcatgtaaaatattccaaataa 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  aggtctgtaacatcttttatattaaaaatagatttttttcatgtaaaatattccaaataa 496

                                                                        
Query: 604  agtttctcctccttcttctcctataagatcctccccacttcttctcacacccaaatctaa 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495  agtttctcctccttcttctcctataagatcctccccacttcttctcacacccaaatctaa 436

                                            
Query: 664  tcccttctggtgataattaggaaataaacacg 695
            ||||||||| ||||||||||||||||||||||
Sbjct: 435  tcccttctgttgataattaggaaataaacacg 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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