BAC Information

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BAC

Clone NameMSMg01-497M08
Chromosome15 (Build37)
Map Location 101,692,706 - 101,693,327
singlet/doubletsinglet
Overlap geneKrt77
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1
Downstream geneKrt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497M08.T7 (MSMg01no497_m08.b1)MSMg01-497M08.TJ (MSMg01no497_m08.g1)
ACCAG574257AG574258
length742752
length of high quality
(start - end)		627 (55 - 681)220 (83 - 302)
definitionCHROMAT_FILE: MSMg01no497_m08.b1 PHD_FILE: MSMg01no497_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:34 2005CHROMAT_FILE: MSMg01no497_m08.g1 PHD_FILE: MSMg01no497_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATACCTTACAGGCTGTCAAACTATGCCCAGCGTCAT
AGTGACAAGTGTATTCACCCAGTTAAGTTCTCATGGTGGTAGGAATGTTG
TGAAATATTTGGAGTCACAGAGAGTGCCTCTAAGATTTCTAAGTGATACA
TTAAAAAGTAGAAAACTTTAAAAAAAATGTGCTATAATAAAAATAAAAGT
GACAAAGGTTGTAGGGGTTAAGAACCTGTTTGTAAATCGCACACCTGGGT
TTAGTGAGTGTTTTCAGGACAGTTGCTTATTACAAGACTTAGGAAAATTA
GGTGGCCTGGCACCTGTGAGTTCTCCAGAACAATTAACTAAAAATGAGCA
AACAAACAAAACAGGCAGGAACTCTCCTATCATATTCAGTGTCAAGGAGA
GAAAGATAATTTCTGAAGTCTTTATTATAGACATGACAGACTTTAAGGTC
TGAAGGCAATAGCAGTTTGAGGACTGTTTATTTGGGGGTGCAAACTCGAA
ACCCAAGCTCACCTTGGTCTGGTACAGGGCCTCAGCCTCATCTTTGCTCT
TCTGTGCAATTATTTCATACTGGGCTCGTACGGCATCGATGATGCTGTCC
AGGTCCAGGGAGCGGTTATTGTCCATTGACAAGATGACATTGGTATCACT
GACGTGGGTTTGTATCTGGGACAGCTCCTGTGAGACACAGAN

AAAACCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTAGGAATGTCAGAT
GTCAGTATATGAAACTCAATTAAAAATCCACAATGGTTCTTATACATATA
TATAAAGAACCACTGATAAATATGTATGTATATTTATATGCATGTATATA
TATATATGTGTATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGAGAGATAGAGATATATAGCACACACACACACACACACGCGCATGTA
TATATAGATAGATAGATATATAGACGCGCGGGGGGGCGGGGGGGAGACAC
ACACATTAGAGAGAGAGGGGGGAACATATATATATATATATATANANANA
NATANNCACATCCCCATATGTTTATATACACCCGCGGGGTACTCCGCTGG
CGTGTCGGTTGTGTTGTGTCGGTGACTTCTCGCTTTAGGGGTTTGTTTTA
AGTGGATTTTTGTATTTTTCTGCTTGTGACGCGCAGAGACTGATTGGTGT
ATTTTTTTTTTGTTCCGGAGAGGCGCGTACTGTTGACCGACTGTCGCACG
GCCAATGCTCCTCGCATGCCCGGGGGCGTGACTAGCTGTTCCGTGTTTCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_m08.b1 MSMg01no497_m08.b1 CHROMAT_FILE:
MSMg01no497_m08.b1 PHD_FILE: MSMg01no497_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:34 2005
         (627 letters)



>mm_chr15_101692502_101693527
          Length = 1026

 Score = 1151 bits (595), Expect = 0.0
 Identities = 616/623 (98%), Gaps = 1/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataccttacaggctgtcaaactatgcccagcgtcatagtgacaagtgtattcac 64
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatacccaagaggctgtcaaactatgcccagcgtcatagtgacaagtgtattcac 264

                                                                       
Query: 65  ccagttaagttctcatggtggtaggaatgttgtgaaatatttggagtcacagagagtgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagttaagttctcatggtggtaggaatgttgtgaaatatttggagtcacagagagtgcc 324

                                                                       
Query: 125 tctaagatttctaagtgatacattaaaaagtagaaaactttaaaaaaaatgtgctataat 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 tctaagatttctaagtgatacattaaaaagtagaaaactttaaaaaaa-tgtgctataat 383

                                                                       
Query: 185 aaaaataaaagtgacaaaggttgtaggggttaagaacctgtttgtaaatcgcacacctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaataaaagtgacaaaggttgtaggggttaagaacctgtttgtaaatcgcacacctgg 443

                                                                       
Query: 245 gtttagtgagtgttttcaggacagttgcttattacaagacttaggaaaattaggtggcct 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 gtttagtgagtgttttcaggacagttgcttattacaaggcttaggaaaattaggtggcct 503

                                                                       
Query: 305 ggcacctgtgagttctccagaacaattaactaaaaatgagcaaacaaacaaaacaggcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggcacctgtgagttctccagaacaattaactaaaaatgagcaaacaaacaaaacaggcag 563

                                                                       
Query: 365 gaactctcctatcatattcagtgtcaaggagagaaagataatttctgaagtctttattat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaactctcctatcatattcagtgtcaaggagagaaagataatttctgaagtctttattat 623

                                                                       
Query: 425 agacatgacagactttaaggtctgaaggcaatagcagtttgaggactgtttatttggggg 484
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 624 agacatgacagactttaaggtcaggaggcaatagcagtttgaggactgtttatttggggg 683

                                                                       
Query: 485 tgcaaactcgaaacccaagctcaccttggtctggtacagggcctcagcctcatctttgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcaaactcgaaacccaagctcaccttggtctggtacagggcctcagcctcatctttgct 743

                                                                       
Query: 545 cttctgtgcaattatttcatactgggctcgtacggcatcgatgatgctgtccaggtccag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttctgtgcaattatttcatactgggctcgtacggcatcgatgatgctgtccaggtccag 803

                                  
Query: 605 ggagcggttattgtccattgaca 627
           |||||||||||||||||||||||
Sbjct: 804 ggagcggttattgtccattgaca 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space:   626872
Effective search space used:   626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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