BAC Information

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BAC

Clone NameMSMg01-497M11
Chromosome15 (Build37)
Map Location 102,655,298 - 102,655,620
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497M11.T7 (MSMg01no497_m11.b1)MSMg01-497M11.TJ (MSMg01no497_m11.g1)
ACCAG574263AG574264
length713737
length of high quality
(start - end)		352 (74 - 425)304 (324 - 627)
definitionCHROMAT_FILE: MSMg01no497_m11.b1 PHD_FILE: MSMg01no497_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:35 2005CHROMAT_FILE: MSMg01no497_m11.g1 PHD_FILE: MSMg01no497_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGATC
CGCGGAATTCCTCCCTGCGTATCTTTGGATATCCAATTCCTCCTTTGGGG
AGTCTATCATGGTATCCATTATGTTGATGATAGGTTCTGTTGATTGAATT
TAATGAGAAAAAAAAACTACTAAAAAATGTATGGGTAAGAGGTTTGCATG
GCAGATAGAAGGGGAGAAGCAGGACAAAAATTTAGGGGCCTTCTACTTCA
GTAAAATTTCTAGGGGTTCACTGGCACAGGGTAGGCACAGATATTCCTTT
TAAGCTAAAGGATTAAGTTGTTTTACCTGGCCCTTACTTCAGGGGAAGGA
AGCATAAGACCTAGTGAATCAGTTTAGATTTTGGAAGCAATAAACTACTT
ATCTGCATAGATTCCACCGATAAACACAACAGTTAGACCATTTGATTTGA
GGGTTAAAATTGTATCTCATCACTCCCTGCATGGATTCCTTATAGCTCTT
GAACCACCAGCCAAAAAAAAAGGTTCCTATGCCAATTTGGAGGGGAATGA
ATTTTGCCCAAAGGGCCCCAACCAAGGGTTTCTTTTTTCTCGGCCAAAAA
TTTTTGGGCCCCAAAAAAAAAATTTTTGGGGAAAAAAAAGGGGTTTTTTT
TGGGGGTAAAACCCCCCTCCAAAAGGGGGGGGGTCCCCCCCCCCCGGAGG
AAAATTCGGGCGG

NNCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGAGGTCCAGAACCTCGTTAATCGATAG
TCTACGGCAGAAGCCCTGGGGCTGAGCACTTTCACCTAAATACCTAGGTC
TGATTTAACTTCTGACATCTTCAGGGGAATAGGGGTAGAGGAGCCTCCTC
TAGCAGCCATCATCCAGTTGATGTGACACCTGTAAGTAAGCAGGACCCAT
GACCAGTAAGTCTAGAACTGCTTTCTCTTCATTTGAGCTCAGATCTTCAC
ACAGGTCAGAACATCTATTTTATTGGAAGTCCCCTTCATCTTCTAAAAGA
TGACTGACGGTTAACAAAACTATTTTAAACAGATTCAGGAAATGATTCTT
ACAGCTTATGACAAAGGAAGTCCGAAAGAGGTTGCTGGAAAGAGGTGAGA
AGCATGATATGGTGCCTGCAGCATTGTGAGCAGACAGACAGACAGACAGA
CAGCTGTGAACTTACTGCAAACGCTGAATTGAAGCCTGGGTATGAAGATC
AGTGGTAGCATGCTTGTCCAGCAAGAGCAAGTACCTGGGTTTTAGTCCCA
GTAAACACACACACACACACACACACACACACACACACACACATATTCAT
ACTCTCAGTTAGAGTGCTTGGAGACCACACAGAGTAGCAATGTGCATTTT
AACAAAACTCGAGGTGACTTATGTGCTCATGGAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_m11.g1 MSMg01no497_m11.g1 CHROMAT_FILE:
MSMg01no497_m11.g1 PHD_FILE: MSMg01no497_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:35 2005
         (304 letters)



>mm_chr15_102655264_102655967
          Length = 704

 Score =  540 bits (279), Expect = e-158
 Identities = 303/323 (93%), Gaps = 19/323 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaagtccccttcatcttctaaaagatgactgacggttaacaaaactattttaaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tggaagtccccttcatcttctaaaagatgactgacggttaacaaaactattttaaacaga 298

                                                                       
Query: 61  ttcaggaaatgattcttacagcttatgacaaaggaagtccgaaagaggttgctggaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttcaggaaatgattcttacagcttatgacaaaggaagtccgaaagaggttgctggaaaga 238

                                                                       
Query: 121 ggtgagaagcatgatatggtgcctgcagcattgtgagcagacagacagacagacaga--- 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 237 ggtgagaagcatgatatggtgcctgcagcattgtgagcagacagacagacagacagacag 178

                                                                       
Query: 178 ----------------cagctgtgaacttactgcaaacgctgaattgaagcctgggtatg 221
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 acagacagacagacagcagctgtgaacttactgcaaacgctgaattgaagcctgggtatg 118

                                                                       
Query: 222 aagatcagtggtagcatgcttgtccagcaagagcaagtacctgggttttagtcccagtaa 281
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 117 aagatcagtggtagcatgcttgtccagcaagagcaagtgcctgggttttagtcccagtaa 58

                                  
Query: 282 acacacacacacacacacacaca 304
           |||||||||||||||||||||||
Sbjct: 57  acacacacacacacacacacaca 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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