BAC Information

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BAC

Clone NameMSMg01-499E17
Chromosome15 (Build37)
Map Location 60,917,452 - 60,918,034
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg
Downstream geneLOC100040323, Myc, Pvt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499E17.T7 (MSMg01no499_e17.b1)MSMg01-499E17.TJ (MSMg01no499_e17.g1)
ACCAG575412AG575413
length712768
length of high quality
(start - end)
389 (49 - 437)583 (75 - 657)
definitionCHROMAT_FILE: MSMg01no499_e17.b1 PHD_FILE: MSMg01no499_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:38 2005CHROMAT_FILE: MSMg01no499_e17.g1 PHD_FILE: MSMg01no499_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATAGTTCGAGAATCCGCGGAATTCTTTAGAGATTTACCCAGA
TATGAGGATATGCAGATGTGTAATAAGATCTACTACAGTAATTAGCTCAT
ACCAGTATGGAAGCTGACAAGTTTTAGGATATGCCATCTACAAAAGGGAA
AGCCAGTGGTACAGTTTGGGCCAAGGCCAAAGGCCTAAGGACATGGGTGG
ACAGGATTGATGGGAGTCCAGTATCTGTATGGCCTGAAAACTTCAAGCAT
TCATTGTCCCCAGAAAGGAGAAGACATGTGGAGAAATGTCTCAAATTAAG
ATGTCTTAGAGGGAGAAAGAGGAAGAGGTTTATTGAGAAACCTACAGAGA
CAAAGACAATTCTTAAAGTGGTAGGGTTTGGTTTTTTGTTTGTTTGTTTT
CGTTTTTGTTTTGTTGGTTTGGTTTGGTTTTCTGANNNTNTTTTCNAAGG
NNTTTCTGGNNNTGTTTTTTCTGCTCTTTTTAGTTGAAATATAAAACTAT
CTGCTACACATGATTAACACAAGTTTATAATATCAGATTTTTACTAATCT
TAATAGAATTTATCCTAACAATTTTACTTCTCTATAATTTGCTTAAGTTG
AAATCCTTGTCCAACTTAATAAGTTGGACAGTTTCTAGTTATTTTCTTTT
TATTTTGATTAAAGAAGTCCCCCTGACGCATCATCTACATGTTTTACATC
CTCTTCCCCAAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATCATCAGGCTTGGTGGCAAGTGT
CTTTATCTATAAAGAGGGCTCAACAGCCCTTAAGAGAACGTTTTAAAAGA
GAAAATAAAATTTTCATTTTCATAATCATTTGGGTTATTTGGGCTCCATG
AGTGTCCATCCATATGAATTTTAGAATCGAACATATATTTTTACCAAGAA
GACTTGCCTATCATAAAGTAGCCCTGGAGAAAGGCATTCCTGTAGTGATT
GTGCGGAGTTTATACAATGTATGACTATTTTAATAATACTGTTTTGCAAA
CCATGAGGACAACCTACTTTTATTTATTTATATATATTTACACTTATTTC
AATGGTTTTCATAATATAAATTTTCACTTTCATAAAACCAGTTCATTTTT
GACACAACAGTAAAAAAGAAAACCACTCAATAGAAGCTTAGAGAAATACA
ATTACTTTTTTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTAT
CCCAAAAGTCCCCCAGACAGCCCCCACACACACACTCCCCTACCCATCTA
CTCCCACTTCTTGGCCCTGGCATTCCCTCGTACTGAGGCATATAATGTTT
GCAAGACCAAGTGGCCTCTCTTCCCAATGATGGCCGAATAGGCCATCTTC
TGATACATATGCGAGGCAGCCTCTAGATGGTCCACCATTTCGTCTCAGCT
CCAAACTTGTCTCTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_e17.g1 MSMg01no499_e17.g1 CHROMAT_FILE:
MSMg01no499_e17.g1 PHD_FILE: MSMg01no499_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:38 2005
         (583 letters)



>mm_chr15_60917252_60918234
          Length = 983

 Score = 1065 bits (551), Expect = 0.0
 Identities = 575/583 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatcatcaggcttggtggcaagtgtctttatctataaagagggctcaacagcccttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatcatcaggcttggtggcaagtgtctttatctataaagagggctcaacagcccttaag 260

                                                                       
Query: 61  agaacgttttaaaagagaaaataaaattttcattttcataatcatttgggttatttgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacgttttaaaagagaaaataaaattttcattttcataatcatttgggttatttgggc 320

                                                                       
Query: 121 tccatgagtgtccatccatatgaattttagaatcgaacatatatttttaccaagaagact 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tccatgagtgtccatccatatgaattttagaatcaaacatatatttttaccaagaagact 380

                                                                       
Query: 181 tgcctatcataaagtagccctggagaaaggcattcctgtagtgattgtgcggagtttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctatcataaagtagccctggagaaaggcattcctgtagtgattgtgcggagtttata 440

                                                                       
Query: 241 caatgtatgactattttaataatactgttttgcaaaccatgaggacaacctacttttatt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 caatgtatgactattttaataatactgttttgcaaaccaagaggacaacctacttttatt 500

                                                                       
Query: 301 tatttatatatatttacacttatttcaatggttttcataatataaattttcactttcata 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttatatatatttacacttacttcaatggttttcataatataaattttcactttcata 560

                                                                       
Query: 361 aaaccagttcatttttgacacaacagtaaaaaagaaaaccactcaatagaagcttagaga 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aaaccagttcatttttgacacaacagtaaaaaagaaaactactcaatagaagcttagaga 620

                                                                       
Query: 421 aatacaattacttttttttaattaggtattttcttcatttacatttcaaatgctatccca 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 aatacaattacttttttttaattaggtatttttttcatttacatttcaaatgctatccca 680

                                                                       
Query: 481 aaagtcccccagacagcccccacacacacactcccctacccatctactcccacttcttgg 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagtcccccagacagcccccccacacacactcccctacccatctactcccacttcttgg 740

                                                      
Query: 541 ccctggcattccctcgtactgaggcatataatgtttgcaagac 583
           |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 741 ccctggcattccttcgtactgaggcatataatatttgcaagac 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)