Query= MSMg01no499_f22.b1 MSMg01no499_f22.b1 CHROMAT_FILE:
MSMg01no499_f22.b1 PHD_FILE: MSMg01no499_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:44 2005
(663 letters)
>mm_chr15_54062446_54063508
Length = 1063
Score = 1102 bits (570), Expect = 0.0
Identities = 647/696 (92%), Gaps = 36/696 (5%)
Strand = Plus / Plus
Query: 4 ggaattctgtatgctctccgatcagtgtaatttcagcactgcatttagaaagagacttgg 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ggaattctgtatgctcaaggatcagtgtaatttcagcactgcatttagaaagagacttgg 227
Query: 64 aaacaaaaaagacctactggttttatgtatataatgaatatttcctggtttctctgaaac 123
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 228 aaacgaaaaagacctaatggttttatgtatataacgaatatttcctggtttctctgaaac 287
Query: 124 gacattctgagtttttatatattttctttttttcagtagaaatttaagtatctgaggctg 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 288 gacattctgagtttttatatattttctttttttcaatagaaatttaagtatctgaggctg 347
Query: 184 gtgagatggctttgcagttaagagtcctagttaatcttccagggtcctgggttcatttcc 243
||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 348 gtgagatggctctggagttaagagtactagttaatcttccagggtcctgggttcatttcc 407
Query: 244 caacagcctcatggaggcttacatgtccctgtaactacagtttcaggggatatgacactc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 caacagcctcatggaggcttacatgtccctgtaactacagtttcaggggatatgacactc 467
Query: 304 ttttctggcctctgtgggagctgagtttacacatggtgtacagaaatacatgcagggaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttttctggcctctgtgggagctgagtttacacatggtgtacagaaatacatgcagggaaa 527
Query: 364 acaataacaacaacaacagcaacacaaacacacatccacatatccacacacatcattatc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acaataacaacaacaacagcaacacaaacacacatccacatatccacacacatcattatc 587
Query: 424 atcat------------------------------------tataattataataagaaat 447
||||| |||||||||||||||||||
Sbjct: 588 atcatacacatccacatatccacacacatcattatcatcattataattataataagaaat 647
Query: 448 aaaaataactatttttaaaagaatacagttctcgttactgcagggattgtatcctgagtc 507
||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 648 aaaaataactatttttaaaagaacacaattctctttactgcagggattgtatcctgagtc 707
Query: 508 ttttatttattttctctattaattttcaccaacaaacttggcagagcaggaaactatgct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttttatttattttctctattaattttcaccaacaaacttggcagagcaggaaactatgct 767
Query: 568 aagttaatacttaatggattcattaattgattaagagaaggaaacccatacctgaattaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aagttaatacttaatggattcattaattgattaagagaaggaaacccatacctgaattaa 827
Query: 628 tgtaatatactcagcccactctgttagtaataagac 663
||||||||||||||||||||||||||||||||||||
Sbjct: 828 tgtaatatactcagcccactctgttagtaataagac 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_f22.g1 MSMg01no499_f22.g1 CHROMAT_FILE:
MSMg01no499_f22.g1 PHD_FILE: MSMg01no499_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:44 2005
(651 letters)
>mm_chr15_54111797_54112847
Length = 1051
Score = 756 bits (391), Expect = 0.0
Identities = 502/579 (86%), Gaps = 66/579 (11%)
Strand = Plus / Minus
Query: 5 catggggagatggttcagtcagtaaagtgcttacagcacttgcgatacaatcatgagtac 64
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||
Sbjct: 517 catggggagatggttcagtcagtaaagtgcttgcagcacttgcgatacaattatgggtac 458
Query: 65 taaagtatgatcccaggaaaacacagtactggtgcattcccatgtttctagccctgtggt 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taaagtatgatcccaggtaaacacagtactggtgcattcccatgtttctagccctgtggt 398
Query: 125 gggggcgactttcatggtatctgaaacttatattcagctaaggttgatattggtcagcac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gggggcgactttcatggtatctgaaacttatattcagctaaggttgatattggtcagcac 338
Query: 185 cctggatccttctgtctctatcacctaagtgctggaaaaataaggtacaggataggcatg 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cctggatccttctgtctccatcacctaagtgctggaaaaataaggtacaggataggcatg 278
Query: 245 gcaacatgtgcttttaatcccggtcctgggatggcagaggcaggcagaggcaggcagagg 304
||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 277 gcaacatgtgcttttaatcccagtcctgggat----------ggcagaggcaggcagagg 228
Query: 305 caggcagaggcaggcagatctctgtgaattaaaggccagcctgataacaaagtgagttcc 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 227 caggcagaggcaggcagatctctgtgaattaaaggccagcctgattacaaagtgagttcc 168
Query: 365 aagataggcagagctacatagacaaaccatatctccaacaagcaagcaagcaagcaag-- 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aagataggcagagctacatagacaaaccatatctccaacaagcaagcaagcaagcaagca 108
Query: 423 --caagcaaacaaacaaacaccctttggcctacacacacacacacacacacacacacaca 480
||| |||||||||||||||||||| |||
Sbjct: 107 aacaaacaaacaaacaaacacccttt-gcc------------------------------ 79
Query: 481 cacacacacacacacacacacacatatacacacacaccctgcaagcccttattttagtaa 540
| | | | ||||||||||||||||| |||||||||||||||
Sbjct: 78 ----------------c-ccccc----acacacacaccctgcaaacccttattttagtaa 40
Query: 541 atatttcctattagcactaatttacattgcgtgcatttg 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 atatttcctattagcactaatttacattgcgtgcatttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
