BAC Information

Click to search

BAC

Clone NameMSMg01-499I06
Chromosome15 (Build37)
Map Location 61,255,900 - 61,256,245
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499I06.T7 (MSMg01no499_i06.b1)MSMg01-499I06.TJ (MSMg01no499_i06.g1)
ACCAG575579AG575580
length732747
length of high quality
(start - end)
80 (246 - 325)347 (331 - 677)
definitionCHROMAT_FILE: MSMg01no499_i06.b1 PHD_FILE: MSMg01no499_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:55 2005CHROMAT_FILE: MSMg01no499_i06.g1 PHD_FILE: MSMg01no499_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACTAAATTTGCGGCGTTCAAGGANNATTATAGGTCNTGATCCGCNGAA
NCNGNAGGCTCCTTCTAGAACCAGGGGGCNCNNNCNNNAGANNGGGAAGC
CNCNNCANAANTTTGCCGCACACGAAAGCAGGNCCNANGAGNNGAAAACA
NCNNNCNCANCCACNCCNANNANCCGNAGGNNNGGNCNNCNCANGGNGNC
CNGGANNNCCNGGANGNNNNGAGNNAGGAACCGAAGGCANNNNCCATTTT
TTTTGATTGTTGTGCATATGTTCTCTATGGAATCTTCTGCACCTGAGATT
CTCTCTTCCATCTTTTTTTTTTTTCNGCNGANGCNCGAGNCNAAGGGNGG
AAANATTCATTTCCACCCTCTGTTTGGATGTGTTTTCCTGTTTTTCTATA
AGGACTTCTACCTGTTTGGATGTGTTTTCCTGTTTTTCTATAAGGACTTG
TAACTCTTTAGCAGTGTTCTCCTGTATTTCTTTAAGTGAGTTATTAAAGT
CCTTCTTTATGTCCTCTACCATCATCATGATATATGCTTTTAAATCCAGG
ACTACCTTTTCTTGTGTGCTAGGGTGTCCTGAACTGGGCTAAGTGGGCGT
TCTGGGTTCTGATGATGGTGAGTGGGCCTGTGTTCTGTTAGTAGGATGCC
TTATTTTTTCTTTTTACCACCCGGCAAACTCTGGAGATACTTGTAAAAAC
TGCCTTTGTTTATAAATTGTTCTTCTGCTGGT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCGAAATCCTTCCTACCACAAAGCACTCTTCTTCCAA
CTTGTAGAGATAAAGAAGCCATTAACACCCAAAAGTACAAGGAAGGCAGC
TTATATGTTAGAAAATGTTGAACTAAATTAGTTATAACTAATTTCCACAC
ATTATTATTTATTTATTACTAGGTTCATATTTACCACTTTAACTTTATTA
TATTTTTGTCCCTGTAATTAGAGACAAGGCTTTCTATTTTATTTCTACCC
TTCTGGCCTAATGTCTCATTTCATTTTGTGCCCAATATATATTGCTGATT
AGACACTCTTGCATTTATTTTATAAATAGAAAAGCCTAATCGTAAATCCT
TACACTTCATATGAGGACATTTATTTTCTATTGGTCAGCTATAATTCATC
TTTTAGTGTTATCACCTATTTACCGTTTTTTTGTAATTAACTTTAAATGT
GCTTTATGTACTAAAGAATGTACACCATTTAAGAATGGGAGACATTAATG
GTGTAGAAGGAAGATGGTATTGCTTCTCATTTTCAGTAAACCTCTGAGGT
TGAGTACCACATATACGAAATAGTAGTAAAGTAACAGCATCAGTGGAATG
GATATATGAGTTAATGAGTTCAGAGAATGTAGTGATATAGAAAGAGTCAT
TGCAAAGTGTGTGCAGCTCCCTATTCATTTAAGACAGAGGATCGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_i06.g1 MSMg01no499_i06.g1 CHROMAT_FILE:
MSMg01no499_i06.g1 PHD_FILE: MSMg01no499_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:55 2005
         (347 letters)



>mm_chr15_61255700_61256445
          Length = 746

 Score =  594 bits (307), Expect = e-174
 Identities = 337/347 (97%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaatatatattgctgattagacactcttgcatttattttataaatagaaaagcctaat 60
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 546 cccaatatatattgctgcttagacactcttgaatttattttataaatagaaaagcctaat 487

                                                                       
Query: 61  cgtaaatccttacacttcatatgaggacatttattttctattggtcagctataattcatc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgtaaatccttacacttcatatgaggacatttattttctattggtcagctataattcatc 427

                                                                       
Query: 121 ttttagtgttatcacctatttaccgtttttttgtaattaactttaaatgtgctttatgta 180
           ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 426 ttttactgttatcacctatttactg-ttttttgtaattaactttaaatgtgctttatgta 368

                                                                       
Query: 181 ctaaagaatgtacaccatttaagaatgggagacattaatggtgtagaaggaagatggtat 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 367 ctaaagaatgtacaccatttaggaatgggagacattaatggtgtagaaggaagttggtat 308

                                                                       
Query: 241 tgcttctcattttcagtaaacctctgaggttgagtaccacatatacgaaatagtagtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 307 tgcttctcattttcagtaaacctctgaggttgagtaccacatatacgaaatagtagtgaa 248

                                                          
Query: 301 gtaacagcatcagtggaatggatatatgagttaatgagttcagagaa 347
           ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 247 gtaacagcatcagtggaatggatatatgagttaatgagtgcagagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 746
Length adjustment: 9
Effective length of query: 338
Effective length of database: 737
Effective search space:   249106
Effective search space used:   249106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)