BAC Information

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BAC

Clone NameMSMg01-499P24
Chromosome15 (Build37)
Map Location 32,600,966 - 32,823,343
singlet/doubletdoublet
Overlap geneSema5a, LOC100040962
Upstream geneTas2r119, 0610007N19Rik
Downstream geneSdc2, Pgcp, 1700084J12Rik, Tspyl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499P24.T7 (MSMg01no499_p24.b1)MSMg01-499P24.TJ (MSMg01no499_p24.g1)
ACCAG575947AG575948
length675715
length of high quality
(start - end)
367 (306 - 672)601 (53 - 653)
definitionCHROMAT_FILE: MSMg01no499_p24.b1 PHD_FILE: MSMg01no499_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:33 2005CHROMAT_FILE: MSMg01no499_p24.g1 PHD_FILE: MSMg01no499_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,822,977 - 32,823,343)(32,600,966 - 32,601,566)
sequence
GACTACTATAGTCCGAAACTGGCNGGAATCTTGGNTTTTAGCAAACACAG
GGATAANTTTAGTTTATAGTTTGCAGTTGGTTTGGATATAATCTTCTGTT
CATCAAAATATTTATCTATGTTGAGTGTTTATTAGAAAAGACTAGAGAGT
TTTACTGATGTCCCATCAGGGCTTGTTAACATTATCTCATGAATTTTACC
CCTCAGTTTAAGGTAATAGAATCGGTTCGTATTCCTAGAGGATTTTTTGA
TAACTCACATGTTTCTTGAATAAAAATCTCTTGTTCTCAGAGCACTTTTT
AACTACTTGCTAATGTCTCTTTCCTAACACTTTCTACTATAACAGGTCAT
GTCCTTAAGTTACATTGGCTGTGTAAAATTAACGAGAGAGTTCTTCCTCT
CCATCCTGGACTAATTTGCGTTGCATCAAAAGGTCATTTCTATACTCCCC
AAACCCATTTGGACTGGAATCTGTTCAATGACAGCTCTCTTAGTTCTTTC
TTCTGTTATAATTAGTCTATTCAAGTTTAGTATTTCTTTAGGATCAATTT
TTGACATTTGTATTTTGCCACAACGTTACTGTTCTCTGTCAGGTTTCAGC
ATATGTTCCCATGGCTTTGCTTCTAAAGATAAGCAATCTCTTGCCAATCT
CTCTTGCACCTGTCTCCCTTGCATN
GGCGGGGCGTCCACATAXXXXXXXXXXXXXXXXXXXXTTCTAAAAAACGG
GGATGAATTTCAGATATTATTTCATTTTTTCCTATTTAATCTTGTGATTT
CAGTATAATTATATCCCCTGTAATTCATAAGTAGACCTACATACACCCTG
TGAAGTTTTTTGAAGTCTACGTGGAAAACACATATCCTAAAATATTATTA
ATTCTTCATCTTAAATTAATGTTTAACTGATCGTCCTTCATTTCATTTGT
CAGATATGCTGACCTTTTCACCAAGTCACTGACTAACTTTTTCTGTTTTG
TTCATAAACATTTATTTATTGAGGAATCAAAATGAAAAGTTGAAAATTAA
TCAGGCTATGCCAATGCCTGGCAAATACAGAAGTAGATGTTCACAGTCAT
CTATTGGATGGAACACAGGGCCCCTAAAGAAGGAGCTAGAGAAAGTACCC
AAGGAGCTAAAGAGGTCAGCAATCCTATAGGAGGATCAACAATATGAACT
AACCAGTACCCCCAGAATTGTGTCTCTGGTTACATATGTAGCAGAGGATG
GCCTAGTTGGCCATCAATGGGAGGAGGTCTTGCAAAGATCATATGCCCCA
GTACAGGGGAATGCCAGAGCCAGGAAGCTGGAGTGGGTGGGTTGGGGAGC
AGGTTGGGGGGAGGCTATTTTCCTCTTTTTTTTCCCTTCGCTTTCTTTTA
CCTCTATTTTGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_p24.b1 MSMg01no499_p24.b1 CHROMAT_FILE:
MSMg01no499_p24.b1 PHD_FILE: MSMg01no499_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:33 2005
         (367 letters)



>mm_chr15_32822777_32823543
          Length = 767

 Score =  687 bits (355), Expect = 0.0
 Identities = 364/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgctaatgtctctttcctaacactttctactataacaggtcatgtccttaagttacat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 567 cttgctaatgtctctttcctaacactttctactagaacaggtcatgtccttaagttacat 508

                                                                       
Query: 61  tggctgtgtaaaattaacgagagagttcttcctctccatcctggactaatttgcgttgca 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 507 tggctgtgtaaaattaacgagagagttcttcctcttcatcctggactaatttgcgttgca 448

                                                                       
Query: 121 tcaaaaggtcatttctatactccccaaacccatttggactggaatctgttcaatgacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcaaaaggtcatttctatactccccaaacccatttggactggaatctgttcaatgacagc 388

                                                                       
Query: 181 tctcttagttctttcttctgttataattagtctattcaagtttagtatttctttaggatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tctcttagttctttcttctgttataattagtctattcaagtttagtatttctttaggatc 328

                                                                       
Query: 241 aatttttgacatttgtattttgccacaacgttactgttctctgtcaggtttcagcatatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 327 aatttttgacatttgtattttgccacaacgttactgttctctgtcaggtttcagcatttg 268

                                                                       
Query: 301 ttcccatggctttgcttctaaagataagcaatctcttgccaatctctcttgcacctgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttcccatggctttgcttctaaagataagcaatctcttgccaatctctcttgcacctgtct 208

                  
Query: 361 cccttgc 367
           |||||||
Sbjct: 207 cccttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no499_p24.g1 MSMg01no499_p24.g1 CHROMAT_FILE:
MSMg01no499_p24.g1 PHD_FILE: MSMg01no499_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:33 2005
         (601 letters)



>mm_chr15_32600766_32601766
          Length = 1001

 Score = 1123 bits (581), Expect = 0.0
 Identities = 596/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatttcagatattatttcattttttcctatttaatcttgtgatttcagtataattat 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaatttcagatattatttcactttttcctatttaatcttgtgatttcagtataattat 260

                                                                       
Query: 61  atcccctgtaattcataagtagacctacatacaccctgtgaagttttttgaagtctacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcccctgtaattcataagtagacctacatacaccctgtgaagttttttgaagtctacgt 320

                                                                       
Query: 121 ggaaaacacatatcctaaaatattattaattcttcatcttaaattaatgtttaactgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaaacacatatcctaaaatattattaattcttcatcttaaattaatgtttaactgatc 380

                                                                       
Query: 181 gtccttcatttcatttgtcagatatgctgaccttttcaccaagtcactgactaacttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccttcatttcatttgtcagatatgctgaccttttcaccaagtcactgactaacttttt 440

                                                                       
Query: 241 ctgttttgttcataaacatttatttattgaggaatcaaaatgaaaagttgaaaattaatc 300
           ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttctggccataaacatttatttattgaggaatcaaaatgaaaagttgaaaattaatc 500

                                                                       
Query: 301 aggctatgccaatgcctggcaaatacagaagtagatgttcacagtcatctattggatgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggctatgccaatgcctggcaaatacagaagtagatgttcacagtcatctattggatgga 560

                                                                       
Query: 361 acacagggcccctaaagaaggagctagagaaagtacccaaggagctaaagaggtcagcaa 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 acacagggcccctaaagaaggagctagagaaaatacccaaggagctaaagaggtcagcaa 620

                                                                       
Query: 421 tcctataggaggatcaacaatatgaactaaccagtacccccagaattgtgtctctggtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctataggaggatcaacaatatgaactaaccagtacccccagaattgtgtctctggtta 680

                                                                       
Query: 481 catatgtagcagaggatggcctagttggccatcaatgggaggaggtcttgcaaagatcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catatgtagcagaggatggcctagttggccatcaatgggaggaggtcttgcaaagatcat 740

                                                                       
Query: 541 atgccccagtacaggggaatgccagagccaggaagctggagtgggtgggttggggagcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgccccagtacaggggaatgccagagccaggaagctggagtgggtgggttggggagcag 800

            
Query: 601 g 601
           |
Sbjct: 801 g 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)