Query= MSMg01no500_d09.b1 MSMg01no500_d09.b1 CHROMAT_FILE:
MSMg01no500_d09.b1 PHD_FILE: MSMg01no500_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:49 2005
(522 letters)
>mm_chr15_91510899_91511825
Length = 927
Score = 907 bits (469), Expect = 0.0
Identities = 511/527 (96%), Gaps = 5/527 (0%)
Strand = Plus / Plus
Query: 1 ctgtgttgtacaacagtgtggctgttctgaagtgagttattataggcctcagtttctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgttgtacaacagtgtggctgttctgaagtgagttattataggcctcagtttctcca 260
Query: 61 tttctaatatgtaggtgttgctgtttttttattcctaatttacccactgtagacttgtaa 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tttctaatatgtaggtgttgctgtttttttattcctactttacccactgtagacttgtaa 320
Query: 121 ctagtcattctgattttatttaatttccctttgggttgtttgagtcttcccatgattttc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagtcattctgattttatttcatttccctttgggttgtttgagtcttcccatgattttc 380
Query: 181 ccgagtttagttaatctacaatatcagagagtactggaaagctcacttccttgtattctt 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ccgagtttagttaatctacaatatcagaaagtactggaaagctcacttccttgtattcca 440
Query: 241 taacaatccacgtgtttgggggtgattacaaaactgtttgtacaggaaacataatttaga 300
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gaacaatccaagtgtttgggggtgattacaaaactgtttgtacaggaaacatgatttaga 500
Query: 301 gtcactcatgcattctcttgcttaccccctcactccagcccatcccccacctccatgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcactcatgcattctcttgcttaccccctcactccagcccatcccccacctccatgaat 560
Query: 361 tgcctctact---gtcctaagccagatctcagtctgtgacgatgggagaaagcctggttt 417
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtctctactcctgtcttaagccagatctcagtctgtgacgatgggagaaagcctggttt 620
Query: 418 gtacagtagaacactg--gcaaaatttgtgtaaaacattttcctctgttgtcaaacttat 475
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gtacagtagaacactgtggcaaaatttgtgtgaaacattttcctctgttgtcaaacttat 680
Query: 476 cccctccaaaggtgatggataccaaagagagaatctctttggtagta 522
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccctccaaaggtgatggataccaaagagagaatctctttggtagta 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 927
Length adjustment: 10
Effective length of query: 512
Effective length of database: 917
Effective search space: 469504
Effective search space used: 469504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_d09.g1 MSMg01no500_d09.g1 CHROMAT_FILE:
MSMg01no500_d09.g1 PHD_FILE: MSMg01no500_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:49 2005
(549 letters)
>mm_chr15_91640010_91640955
Length = 946
Score = 994 bits (514), Expect = 0.0
Identities = 540/550 (98%), Gaps = 5/550 (0%)
Strand = Plus / Minus
Query: 1 ttccctgatctctgggagagaacaggccagctgtttccttccccctaattgcatagctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttccctgatctctgggagagaacaggccagctgtttccttccccctaattgcatagctat 687
Query: 61 aatctttctcatagtcctattaaacataaagtctcactcattagtgtatcccccacacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aatctttctcatagtcctattaaacataaagtctcactcattagtgtatcccccacacta 627
Query: 121 gactgtcaatataacttcctaaaaacaaatgccaatctctcctatatgtccacaattcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gactgtcaatataacttcctaaaaacaaatgccaatctctcctatatgtccacaattcag 567
Query: 181 tgcaccattatcatacatagcgaagtgtgtgtgctgtgctggcccatttgattcactgta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 566 tgcaccattatcatacatagcgaagtgtgtgtgctgtgctggcccatttgattcactg-a 508
Query: 241 ttggacagaaggatggatcaacaaagagtgaactagcaaggttgaatgggcacctggaaa 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 507 gtggacagaaggatggatcaacaaagaatgaactagcaaggttgaatgggcacctggaaa 448
Query: 301 aaagtgaggaacttcaaatttgtgattgacttagacagaatatatagaaatgtcagggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaagtgaggaacttcaaatttgtgattgacttagacagaatatatagaaatgtcagggga 388
Query: 361 attgaaaaaaaaaatcaacatttcttttaataggcaggagggtttttt-cctccattttt 419
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 387 attg---aaaaaaatcaatatttcttttaataggcaggagggttttttccctccattttt 331
Query: 420 tctttctgttctttaaggaagatgaaaatatcccctcctgccagagagccattgttttca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tctttctgttctttaaggaagatgaaaatatcccctcctgccagagagccattgttttca 271
Query: 480 ttgattttgctcaagtgtttgctgagtcttcaataaagacttccgtgagcatgaacataa 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 270 ttgattttgctcaagtgtttgctgagtcttcaataaagacttccgtgagaatgaacataa 211
Query: 540 acacagggtt 549
||||| ||||
Sbjct: 210 acacatggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 946
Length adjustment: 10
Effective length of query: 539
Effective length of database: 936
Effective search space: 504504
Effective search space used: 504504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
