Query= MSMg01no500_h14.b1 MSMg01no500_h14.b1 CHROMAT_FILE:
MSMg01no500_h14.b1 PHD_FILE: MSMg01no500_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:07 2005
(630 letters)
>mm_chr15_89887828_89888857
Length = 1030
Score = 555 bits (287), Expect = e-162
Identities = 301/309 (97%), Gaps = 6/309 (1%)
Strand = Plus / Minus
Query: 328 tttagcaaagtagcagggtttagcagtcaacttagaaaaatcgatagcctttctataaac 387
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1030 tttagcaaagtagcagggtttagcaatcaacttagaaaaatcgatagcctttctataaac 971
Query: 388 caacatcaaacctactgagaatgaagtcatggaaatactcctattctcaattgccaccaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 caacatcaaacctactgagaatgaagtcatggaaatactcctattctcaattgccaccaa 911
Query: 448 aaataaaaaaataaaagaagtatatgggaataaacctagccaagtatgccaaagacctca 507
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 910 aaataaaaaaataaaagaagtgtatgggaataaacctagccaagtatgccaaagacctca 851
Query: 508 agtctaaggtcttg------tgtgtaaggtatatataaagccttaaatgtgtgacgagat 561
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 agtctaaggtcttgtgtgtatgtgtaaggtatatataaagccttaaatgtgtgacgagat 791
Query: 562 tgaggaagacactaaaagatgagaggaccatccatgctcacatattgcaagagttaatcc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgaggaagacactaaaagatgagaggaccatccatgctcacatattgcaagagttaatcc 731
Query: 622 tatgaaaaa 630
|||||||||
Sbjct: 730 tatgaaaaa 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_h14.g1 MSMg01no500_h14.g1 CHROMAT_FILE:
MSMg01no500_h14.g1 PHD_FILE: MSMg01no500_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:07 2005
(612 letters)
>mm_chr15_89684987_89685998
Length = 1012
Score = 1160 bits (600), Expect = 0.0
Identities = 609/612 (99%)
Strand = Plus / Plus
Query: 1 tggcctgaatccattgggtccttagcttttttgagttaggaaagttttatttagtgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcctgaatccattgggtccttagcttttttgagttaggaaagttttatttagtgcttc 260
Query: 61 tatcttattgactattataaatctgtatggactgctgacttttgttagcttaaccttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcttattgactattataaatctgtatggactgctgacttttgttagcttaaccttggt 320
Query: 121 aggtcatatgcacctagatatacatgcatttcttctcgatttttccaattcagtgaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtcatatgcacctagatatacatgcatttcttctcgatttttccaattcagtgaaatg 380
Query: 181 taaattttagagtacgtccttatgattctctgaacttccccagtacttgttgtaatgttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaattttagagtacgtccttatgattctctgaacttccccagtacttgttgtaatgttg 440
Query: 241 tcttttttatttctagttgtactaacttgagtcttttctctattttggttaatttgacta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttttatttctagttgtactaacttgagtcttttctctattttggttaatttgacta 500
Query: 301 aggtcttgttaattttattttttctaagaaacacccttttcattgattctatcacccccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtcttgttaattttattttttctaagaaacacccttttcattgattctatcacccccc 560
Query: 361 ttctctatcaccaatgtctgctctgatattcttcattatttctctccatctgcagctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctctatcaccaatgtctgctctgatattcttcattatttctctccatctgcagctttt 620
Query: 421 gggattggtttgattttgcttcaccaacacctttaggtggtgtaagcacccacaattact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggattggtttgattttgcttcaccaacacctttaggtggtgtaagcacccacaattact 680
Query: 481 tactcagccaagatatgactgatcccctgatatggccaagaggaattaggtcaggacagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactcagccaagatatgactgatcccctgatatggccaagaggaattaggtcaggacagt 740
Query: 541 tagaggagccacagcacagctgaagccatgacagtttaactgggaacaatgaaaccttta 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagaggagccacagcacagctgaggccatgacagtttaactgggaacaatgaaaccttta 800
Query: 601 atacctttatca 612
||||||||||||
Sbjct: 801 atacctttatca 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
