BAC Information

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BAC

Clone NameMSMg01-500O02
Chromosome15 (Build37)
Map Location 49,220,289 - 49,394,638
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500O02.T7 (MSMg01no500_o02.b1)MSMg01-500O02.TJ (MSMg01no500_o02.g1)
ACCAG576611AG576612
length650655
length of high quality
(start - end)
324 (296 - 619)225 (63 - 287)
definitionCHROMAT_FILE: MSMg01no500_o02.b1 PHD_FILE: MSMg01no500_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:36 2005CHROMAT_FILE: MSMg01no500_o02.g1 PHD_FILE: MSMg01no500_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,220,289 - 49,220,612)(49,394,415 - 49,394,638)
sequence
CACTATAGTCAGTAGACTGCGCGGAATCTCCAGNNCTGCATAAACAGCTT
GCTCCCCAATGTGACTTTCTGTGTGTATGCCTGCTTGCAAAGCCCAGTTT
CTCTGATGAAGACTGAAAGATGCATAAAGCTCCTGGTATAGCAATAAGAT
ACCATACTCTCAAAGAATATAATACAATGCTTCTAAATTATATTTTCTAT
CTTTTTTACTTTCATAATTTATACTTCTGTTATATTTTCACAACTAAGAC
ATTTTCACCTAAAAATATCCAACTTTACTTCAGTAATTGCGTCCCTTGTA
TGACAAATATCTACTGATCAAGCACAGAATACCCCCCTACCTCTCAATGG
CCCAATTTGCATATTACAGCTTCATTTTTTGGCATTGGTAATTACCAATA
GAAAATTCAGAGAGACCTAATCTTAGGAGCCAAAATTTTTTATACCTAGC
AGGAATCTATCATAACATTCTGTGTGGCTTATGCACTACCTTTCTCTTCA
TTTAATTGGACAAAAGTGACCAGTATGAATTAAACTGGGAAAAGATGCTA
CTATTATATCAACAAAATTATAGCTACCAATCTGTTTTACTTTATGGCAC
CTATTTCTTGATATATGTTTTCATATTAGGTTTGGTAGCTTATTTAGCAC

GCCGGGACTCANCATTAAGGTNGAACNANACAAGGATGCGAAGATGACGC
TTCANTCCATGGGTGACAACTTTTTTGAAGTTAAAATTATTACCCCTTTA
TGCACTCATTTAAAAATAAATCCTTTGATTTCTTTTGATTAATCTCAACA
CAGTCTCTATAATTAAGTTACATTTATTTATTGTTTACTTGAAGTTGATA
TCTGCTCTATTTCACCAGCTGTATTCTGGCAAGTTTGCGGAGCTAGTCTT
CCTTAAACATTTCAGGAGTCAGTTGTCTAATCATTCNGGGGCAAGAGTTT
CCCTTCATCACAGAATAATTAGAAACCCATCATTTTGTCATTATGCACTG
TTTTTTTTTTTTCCAATGTGTAGTTCTTTCTAGTTGCTGCTACAACAAAA
GTAAATTCAGTTTGGTTTAACTATCCATAGAGGGTCCAAAGTCGATATCT
AAAAAAGGCACCTATTCAAAAGAAATATAAAGGGAAATTGCAGTCAAGCA
GCTTCACCATCTGGGTCATATGAAAATGAGAAGCAGTGATGAGGGTCTGC
ATGCTGATGGTGCTGCAGACCTAATCAACTTGCTGTCTCTCCAAGCAGNC
ATGTGTGCAGATTAATGAAGAGCGGTGTCAGAATAAAACTTCCCGCTGAC
TTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_o02.b1 MSMg01no500_o02.b1 CHROMAT_FILE:
MSMg01no500_o02.b1 PHD_FILE: MSMg01no500_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:36 2005
         (324 letters)



>mm_chr15_49220089_49220812
          Length = 724

 Score =  588 bits (304), Expect = e-172
 Identities = 319/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtatgacaaatatctactgatcaagcacagaatacccccctacctctcaatggcccaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttgtatgacaaatatctactgatcaagcacggaatacccccctacctctcaatggcccaa 260

                                                                       
Query: 61  tttgcatattacagcttcattttttggcattggtaattaccaatagaaaattcagagaga 120
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcatattatggcttcattttttggcattggtaattaccaatagaaaattcagagaga 320

                                                                       
Query: 121 cctaatcttaggagccaaaattttttatacctagcaggaatctatcataacattctgtgt 180
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaatcttaggagccagatttttttatacctagcaggaatctatcataacattctgtgt 380

                                                                       
Query: 181 ggcttatgcactacctttctcttcatttaattggacaaaagtgaccagtatgaattaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcttatgcactacctttctcttcatttaattggacaaaagtgaccagtatgaattaaac 440

                                                                       
Query: 241 tgggaaaagatgctactattatatcaacaaaattatagctaccaatctgttttactttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggaaaagatgctactattatatcaacaaaattatagctaccaatctgttttactttat 500

                                   
Query: 301 ggcacctatttcttgatatatgtt 324
           ||||||||||||||||||||||||
Sbjct: 501 ggcacctatttcttgatatatgtt 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no500_o02.g1 MSMg01no500_o02.g1 CHROMAT_FILE:
MSMg01no500_o02.g1 PHD_FILE: MSMg01no500_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:36 2005
         (225 letters)



>mm_chr15_49394215_49394839
          Length = 625

 Score =  410 bits (212), Expect = e-119
 Identities = 221/224 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacaacttttttgaagttaaaattattacccctttatgcactcatttaaaaataaatc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 424 gtgacaacttttttgaagttaaaattatcacccctttatgcactcatttaaaaataaatc 365

                                                                       
Query: 61  ctttgatttcttttgattaatctcaacacagtctctataattaagttacatttatttatt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cttttatttcttttgattaatctcaacacagtctctataattaagttacatttatttatt 305

                                                                       
Query: 121 gtttacttgaagttgatatctgctctatttcaccagctgtattctggcaagtttgcggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 304 gtttacttgaagttgatatctgctctatttcaccagctgtattctggcaagtttgtggag 245

                                                       
Query: 181 ctagtcttccttaaacatttcaggagtcagttgtctaatcattc 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctagtcttccttaaacatttcaggagtcagttgtctaatcattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)