Query= MSMg01no501_g10.b1 MSMg01no501_g10.b1 CHROMAT_FILE:
MSMg01no501_g10.b1 PHD_FILE: MSMg01no501_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:14 2005
(643 letters)
>mm_chr15_52213979_52215021
Length = 1043
Score = 1205 bits (623), Expect = 0.0
Identities = 635/639 (99%)
Strand = Plus / Plus
Query: 5 gaattcttggcagttacaaaaaccttcaagggcaattgtaaattatgaagagtgatgagc 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggcagaaagaaaaaccttcaagggcaattgtaaattatgaagagtgatgagc 264
Query: 65 agaaaggtcttgagcagattttccagtttgtacaactctgtggaaactggacagtggaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaaggtcttgagcagattttccagtttgtacaactctgtggaaactggacagtggaga 324
Query: 125 ggatgctatttagaaaggatattctccatcatgcacaacctccaagtggaaatatgtaga 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggatgctatttagaaaggatattatccatcatgcacaacctccaagtggaaatatgtaga 384
Query: 185 gacataagcatctgttactattgtacatgccatcacttctgttacccgttttgattcact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacataagcatctgttactattgtacatgccatcacttctgttacccgttttgattcact 444
Query: 245 atttaccccccaaacacacacacagacacacacactcacacacacacacacactgttgca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttaccccccaaacacacacacagacacacacactcacacacacacacacactgttgca 504
Query: 305 ttcttgagattcttactcactagttttgctgtggacagaagtggggtgggaaggagacac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcttgagattcttactcactagttttgctgtggacagaagtggggtgggaaggagacac 564
Query: 365 aaggagaggaatgaacagtacagagctagtctgttggcggaattttgactgtctcctgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggagaggaatgaacagtacagagctagtctgttggcggaattttgactgtctcctgct 624
Query: 425 gggaagcatgggttaattagactttcctgtccagctcccactaaatcatttcctacacct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggaagcatgggttaattagactttcctgtccagctcccactaaatcatttcctacacct 684
Query: 485 atgctcagtgctgggggccacttctcatcattcaaggttagggatggcagaggcttgatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgctcagtgctgggggccacttctcatcattcaaggttagggatggcagaggcttgatg 744
Query: 545 gcttctacatagcgttgatgttctatatctttgttacagcttgatgatggataaatatcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcttctacatagcgttgatgttctatatctttgttacagcttgatgatggataaatatcc 804
Query: 605 cacaactttccctgtgtaaaattcttgatctgccgaggg 643
|||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cacaactttccctgtgtaaaattcttgatctgccgaggg 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_g10.g1 MSMg01no501_g10.g1 CHROMAT_FILE:
MSMg01no501_g10.g1 PHD_FILE: MSMg01no501_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:14 2005
(637 letters)
>mm_chr15_52388518_52389554
Length = 1037
Score = 940 bits (486), Expect = 0.0
Identities = 553/586 (94%), Gaps = 20/586 (3%)
Strand = Plus / Minus
Query: 3 tcttctagtggaggaatatgatttaaaatctcacacttaccctttaaaacccactgtatt 62
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 570 tcttctagtggaggaatatgatttaaaatctcacacttaccctgtaaaacccactgtatt 511
Query: 63 tcatgttggtgtctagtcagtcaaatgactagtgctacacccacactcactgccctttga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcatgttggtgtctagtcagtcaaatgactagtgctacacccacactcactgccctttga 451
Query: 123 ggcagaagcactgtccactccacagtatggaagtacaaatttaatcttaacagagatttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggcagaagcactgtccactccacagtatggaagtacaaatttaatcttaacagagatttg 391
Query: 183 taggactctgtccaagtgctaagagctgtctggatttgccttcttattaggttgtgaagt 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 taggactctgttcaagtgctaagagctgtctggatttgccttcttattaggttgtgaagt 331
Query: 243 cgtttttt----ttatgtgaatttgaactctttgcaatctcttacatgcatgtgcaggtg 298
|| || | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 330 cg----ttcacatcatgtgaatttgaactctttgcaatcgcttacatgcatgtgcaggca 275
Query: 299 ttgcagtcttatttctaataatgcttgagtcttttaagatataaatcttatttcacagat 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 274 ttgcagtcttatttctaataatgcttgagtcttttaagatatgaatcttatttcacagat 215
Query: 359 gagctctgcttctacatatgtatgtatatatgttttctacacaaaacacattactaatat 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gagctctgcttctgcatatgtatgtatatatgttttctacacaaaacacattacta---- 159
Query: 419 atatatatatatatacacacacacacatacaacttaagagaagtaatttaatgtctctta 478
||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 158 ----atatatatatacacatacac----acaacttaagagaagtaatttaatgtctctta 107
Query: 479 atttttgttgcatcatatgtcaaattagaataatagaacctacttgcttaaattagtggt 538
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 106 atttttgttgcatcatatgtcaaattagaataatagaacctagttgcttaaattagtggt 47
Query: 539 aaaagtgtctgggacaacatcggaagtcagctgatatatagcagag 584
||||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct: 46 aaaagtgcctgagacaacatcggaagttagctgatatatagcagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
