Query= MSMg01no501_p01.b1 MSMg01no501_p01.b1 CHROMAT_FILE:
MSMg01no501_p01.b1 PHD_FILE: MSMg01no501_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:51 2005
(622 letters)
>mm_chr15_80605468_80606489
Length = 1022
Score = 1100 bits (569), Expect = 0.0
Identities = 604/623 (96%), Gaps = 15/623 (2%)
Strand = Plus / Plus
Query: 1 tcaacatagaaacaacatttctcacctaaggctgcacagagtcctccctgctggaagaat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 214 tcaacatagaaacaacatttctcacctaaggctgcacagagtcttccctgctggaagaat 273
Query: 61 agcaagtctgggtgtcttctgttctataagagtacttctgggggctgtagagatggctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agcaagtctgggtgtcttctgttctataagagtacttctgggggctgtagagatggctca 333
Query: 121 gcggttaagagcactgactgctctttccaggg-tcctgagttcagtttccagcaaccaca 179
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 334 gcggttaagagcactgactgctctttc-aggggtcctgagttcagtttccagcaaccaca 392
Query: 180 tggtggctcacaaccatctgtaatgggatctgatgccctcttctggtgtgtctgaagaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tggtggctcacaaccatctgtaatgggatctgatgccctcttctggtgtgtctgaagaca 452
Query: 240 gcaacagtatatttatacatacaaaatatatatatatatatatatatattttaaagaata 299
||||||||||| |||||||||||| ||||||||| | ||||||||||||
Sbjct: 453 gcaacagtatacttatacatacaa--tatatatattt-----------ttttaaagaata 499
Query: 300 cttctttcaggaaggataggaatcctgcagggccatgatggacttttccatctcctgtat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttctttcaggaaggataggaatcctgcagggccatgatggacttttccatctcctgtat 559
Query: 360 atctgtatccatagggccctgtaatttttatcttggagtattaaggctgaggcccctaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atctgtatccatagggccctgtaatttttatcttggagtattaaggctgaggcccctaca 619
Query: 420 ttagcagctctggccaggcctatgccaaggaaagaacctagtaacatagtgagaatggcc 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttagcagctctggccagacctatgccaaggaaagaacctagtaacatagtgagaatggcc 679
Query: 480 atcctttttacctgattgtttggagttactagctggttgaagacatcttccccagagtaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atcctttttacctgattgtttggagttactagctggttgaagacatcttccccagagtaa 739
Query: 540 taaatcactctggatacaagctatactaggacacaaacattctcagtcatatttacaacc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taaatcactctggatacaagctatactaggacacaaacattctcagtcatatttacaacc 799
Query: 600 aggccataaatgcatggagtaaa 622
|||||||||||||||||||||||
Sbjct: 800 aggccataaatgcatggagtaaa 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_p01.g1 MSMg01no501_p01.g1 CHROMAT_FILE:
MSMg01no501_p01.g1 PHD_FILE: MSMg01no501_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:51 2005
(366 letters)
>mm_chr15_80745639_80746404
Length = 766
Score = 706 bits (365), Expect = 0.0
Identities = 365/365 (100%)
Strand = Plus / Minus
Query: 1 gataataaaatgcttatataaatactgagtaagcaatctgtttggtttagactaagggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gataataaaatgcttatataaatactgagtaagcaatctgtttggtttagactaagggaa 506
Query: 61 tattattagtgtctccatcctctaagaggacatttgcttttctgtggacagtgtggctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattattagtgtctccatcctctaagaggacatttgcttttctgtggacagtgtggctca 446
Query: 121 caccctgaggtacagcacagtgaggtagtgcagaatgaaatgctcaattatcttggggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caccctgaggtacagcacagtgaggtagtgcagaatgaaatgctcaattatcttggggat 386
Query: 181 tgactgccaaggaaatgggaaaacatgatctacattttctgataaggaaagaggatactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgactgccaaggaaatgggaaaacatgatctacattttctgataaggaaagaggatactg 326
Query: 241 tactgaggtatcttttagcatgccattttatttatatttattatccagacctggcaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactgaggtatcttttagcatgccattttatttatatttattatccagacctggcaaatc 266
Query: 301 actagcctgaggaagttattaaagtgcccagagctatggatgacccaagactagggttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actagcctgaggaagttattaaagtgcccagagctatggatgacccaagactagggttac 206
Query: 361 tcagt 365
|||||
Sbjct: 205 tcagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
