Query= MSMg01no502_a09.b1 MSMg01no502_a09.b1 CHROMAT_FILE:
MSMg01no502_a09.b1 PHD_FILE: MSMg01no502_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:57 2005
(297 letters)
>mm_chr15_8478241_8478937
Length = 697
Score = 507 bits (262), Expect = e-148
Identities = 286/294 (97%)
Strand = Plus / Minus
Query: 1 aaaatgagagcacttaaaaataatttcaattcattttaaattttaagaagagcgatgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaaatgagagcacttaaaaataatttcaattcattttaaattttaagaagagcgatgaat 435
Query: 61 ttgttttaaggtgctccattcttaaaaatccattagccagttcccttgtcactaggataa 120
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 434 ttgttttaaggtgctcccgtcttaaaaatccattagccacttcccttgtcactaggataa 375
Query: 121 agtccagtttctggaggatgcaggttaggggaggaaggacttacggtggttcacaaattc 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 374 agtccagtttctggaggatgcaggttaggggaggaaggacttattgtggttcacaaattc 315
Query: 181 caagactctcagtctaccatggcagagacgtgtggtagaagaaacttagcctatggcagc 240
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 314 caagactctcagtctaccatggcagagacatgtggcagaagaaacttagcctatggcagc 255
Query: 241 aggagctggcaactacttgtttatggggggtgaggggaggtagaggggagatgg 294
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aggagctggcaactgcttgtttatggggggtgaggggaggtagaggggagatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_a09.g1 MSMg01no502_a09.g1 CHROMAT_FILE:
MSMg01no502_a09.g1 PHD_FILE: MSMg01no502_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:57 2005
(593 letters)
>mm_chr15_8296720_8297710
Length = 991
Score = 1062 bits (549), Expect = 0.0
Identities = 580/595 (97%), Gaps = 13/595 (2%)
Strand = Plus / Plus
Query: 1 cataatttctagtactataatttatataaatttaaatgagaatctaaaaaaactgaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataatttctagtactataatttatataaatttaaatgagaatctaaaaaaactgaaaca 260
Query: 61 ttagaagccagaaaattttggtgggaaaggtaaaaaaaa-ggtaccatatttaaaatacc 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttagaagccagaaaattttggtgggaaaggtaaaaaaaaaggtaccatatttaaaatacc 320
Query: 120 caattatttttactacaatattaagtatttattattt-aatgtttgcatagattctcttt 178
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 321 caattatttttactacaatatta----tttattattttaatgtttgcatagattctcttt 376
Query: 179 agcaagattaccttaattttatttagaataagggaatttagtatgttaaagatctttcta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agcaagattaccttaattttatttagaataagggaatttagtatgttaaagatctttcta 436
Query: 239 aaataaagtttttaatgagtcacttgctgacccttactctgtcatcaaatatgcaatggc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaataaagtttttaatgagtcacttgctgacccttactctgtcatcaaatatgcaatggc 496
Query: 299 taatattgattatcaacttgacaggctctagaatcagctatgagacaagcctctgagcat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taatattgattatcaacttgacaggctctagaatcagctatgagacaagcctctgagcat 556
Query: 359 atcagtgagggtttaggttagcttaggtcagggatgggtgtgtcttgtgtggttgtgtgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atcagtgagggtttaggttagcttaggtcagggatgggtgtgtcttgtgtggttgtgtgt 616
Query: 419 gtctgtgtgtgtgtgtgtatatatatatatatatgtatgtatgtgaataacttgactggt 478
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 617 gtctgtgtgtgtgtgtgtatatatatatatatat--atgtatgtgaataacttgactggt 674
Query: 479 ggggaaattcccaggacttgggtcctggattacataaaaaggtaaaggctaggtgggcac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggggaaattcccaggacttgggtcctggattacataaaaaggtaaaggctaggtgggcac 734
Query: 539 cagcattcattactagctcccccccccccccgcctccctgaaggctacaatgtga 593
|||||||||||||||||| |||||||||||| ||| ||||||| ||||||||
Sbjct: 735 cagcattcattactagcttcccccccccccc----ccc-gaaggctgcaatgtga 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 991
Length adjustment: 10
Effective length of query: 583
Effective length of database: 981
Effective search space: 571923
Effective search space used: 571923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
