BAC Information

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BAC

Clone NameMSMg01-503E11
Chromosome15 (Build37)
Map Location 15,033,075 - 15,033,377
singlet/doubletsinglet
Overlap geneLOC100040033
Upstream geneLOC674819, LOC100040024
Downstream geneLOC100040046, EG239341, LOC100040087
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503E11.T7 (MSMg01no503_e11.b1)MSMg01-503E11.TJ (MSMg01no503_e11.g1)
ACCAG578433AG578434
length702692
length of high quality
(start - end)
303 (327 - 629)64 (168 - 231)
definitionCHROMAT_FILE: MSMg01no503_e11.b1 PHD_FILE: MSMg01no503_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:31 2005CHROMAT_FILE: MSMg01no503_e11.g1 PHD_FILE: MSMg01no503_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCCTTTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAGAA
AAGCGCNGGAATCATGAATTACACAACAGCAGGATTGTAGTTTACTGTCA
ATGATGTCTGTTACATCTATGTTACTTGTTTGCTTAAAGAAAATGTATAA
TCACCTACCCACAGATTATCAAGGAAATATCACCTATAGACAAGAAGCCT
TGCCCGAGTGATAATTATTCCGTAATCAAAACCAAGATATATTTCTGTTG
TTAATGTAAATGGATATTGAATATCTCCCACAAATGTTCAGGAAAGTTAT
TCAAAAAATCTTTAGATTTATCTATCAGTAGAATTTCAGAATGAAACATA
GTATCTGCAATGTGTTTGGTCATAATTAGAGACCTATGAATGGAGATTTC
TAGGCTAAGCAGTAGCAATGTAACAGAAGGCAGTGACTTTCCGTCTAGGA
TGTGTTGGTGGCCTATTGTTCAGCAGGAAAGAGTGGGACCCATGAGCCCT
TCACCCATCTGTGACTGATTATTCAAATGGCCAGTATCATACCACCCTGA
GATCATACAACCAACTGAAATAAGTTCATTATTACAATGACTATGAGTGT
TGTGCCCTGAAGAACTTTAGAGAGATAATGACTTACAGAGTAATTTCTCT
TTTTCCTGATCATCATCAGTTCAAGAGAACTGCCTGTTTGGTGGTCCAGT
GC
NNNNTTTTNCCAATNCANNNNNAANCCGGGGGGCGCCGTTTTCAAAAAGG
GGNGAANNANAGAATACCCAAAAAATGANCTTNNCCNGNNNCNNANAANA
NNNANANGAAAAATTTTCNCNACNGCCCACNTCNGNCACCANGAATCTCC
TCACCAGAAAACCATANATGAACAAACATATACAGGAACAAACCCATTTC
TCCANCATTTATTACAGCTCTTTGGTCACGCTCAAAATTTTTTTNNGGGT
TAAAAACTNCCAAAAAAAACGGGAATCCTGTGTGGCCAAAACCCACTTTA
CCCNNAAGCCCCCAAANCAACCCNNCCCCCNAAANNNNGGAAAAGGGGGG
GTCGCNCTGGGNNNGGGTCCGCTTGATGGGGGTGCGGAGACGGGNNNNNC
NNNNNNNNNNNNNNNNNNNNNNNNNNTTNTTNNNTNTTGGTGGGGTGGGG
GGGGGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTNNTNTNTNNNNNNTTTTTNTTNNTTTTTGTTTTGGGAAGGGGGGC
TGTGGGGTTNTNNNNNNNNNTNTNNTTTNTTTTNNNTTTTTNNNNNNNNT
TTTTTTTNTTTNNNTTTTNNNNNNTTTNNTNNTTTNNNNNANNTTTTTTT
NNNNNNNNTNTTATTNNTTTTATGAATAAAATTGTTTAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_e11.b1 MSMg01no503_e11.b1 CHROMAT_FILE:
MSMg01no503_e11.b1 PHD_FILE: MSMg01no503_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:31 2005
         (303 letters)



>mm_chr15_15033044_15033746
          Length = 703

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtagaatttcagaatgaaacatagtatctgcaatgtgtttggtcataattagagaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agtagaatttcagaatgaaacatagtatctgcaatgtgtttggtcataattagagaccta 275

                                                                       
Query: 61  tgaatggagatttctaggctaagcagtagcaatgtaacagaaggcagtgactttccgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgaatggagatttctaggctaagcagtagcaatgtaacagaaggcagtgactttccgtct 215

                                                                       
Query: 121 aggatgtgttggtggcctattgttcagcaggaaagagtgggacccatgagcccttcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aggatgtgttggtggcctattgttcagcaggaaagagtgggacccatgagcccttcaccc 155

                                                                       
Query: 181 atctgtgactgattattcaaatggccagtatcataccaccctgagatcatacaaccaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atctgtgactgattattcaaatggccagtatcataccaccctgagatcatacaaccaact 95

                                                                       
Query: 241 gaaataagttcattattacaatgactatgagtgttgtgccctgaagaactttagagagat 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 94  gaaataagttcattattacaatgactgtgagtgttgtgccctgaagaactttagagagat 35

              
Query: 301 aat 303
           |||
Sbjct: 34  aat 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)