BAC Information

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BAC

Clone NameMSMg01-503J13
Chromosome15 (Build37)
Map Location 67,309,912 - 67,310,440
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc6, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503J13.T7 (MSMg01no503_j13.b1)MSMg01-503J13.TJ (MSMg01no503_j13.g1)
ACCAG578676AG578677
length716706
length of high quality
(start - end)
583 (82 - 664)529 (88 - 616)
definitionCHROMAT_FILE: MSMg01no503_j13.b1 PHD_FILE: MSMg01no503_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:55 2005CHROMAT_FILE: MSMg01no503_j13.g1 PHD_FILE: MSMg01no503_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GTGTTTTCCCTTTCTATAATTGCGGCGCTAAACGAATACTATATTCAGAG
GACCGCGGAATTCTTTGTTCTTCTCTGAGCCCATTTTTTAATGGAGTTAT
TTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATT
AGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTATTGG
TGGCCTTTTTGTCTTATTGACATTGTCTTTTGCTTTGCAGAAGCTTTGCA
ATTTTATGAGGCCCCATTTATCGATTCTTGATCTTACAGCACAAGCTATT
GCTGTTCTATTCAGGAATTTTTTTCTCTGTACCCATATCTTCAAGGCTTT
TCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGT
TCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATC
AATTCGCATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGT
TGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAA
TTCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTT
CCATTGGTCTACTTGTCTGTCGCTATACCAGTACCATGCAGTTTTGATCA
CAATTGCTCTGTAGTACAGTTTTAGGTCCAGCATGGTGATTTCACCAGAG
GTTCTTTTTTCCTTGG
CCTTTGTTTTTACGATGCTATGTGTXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGGATGCTATAT
GGGGACCAGGGAGGTGGTGGGTAGCACTCATGAACTATTTTCCAATCATC
CCTCTTTCTTTTTGAGATAGAGAAACTAAGAGTAGAAGTAGGTAAGGATG
TCTAAATTCAAGCTCAAAATGATAGATGTGGACATCAACTCCACATCCCT
GTCTAGCTCAGACAGCCTGGGTGGCCATTATTCCCCAAGCTCCTCTTTCA
ACAGAGGAAACTGCACAGAGTGGATTTATCATCCACAAGAGTATCTAGTA
CAGGATGCTGCTGGAAATGGATGCAAACCAATTCATCAAGAACTGCCTTT
TGCCTTGGGAATTAGTCACAGCTCCTCATTTCCTGGACTTCCTGGCAAAA
CACTTATTTGCTCTGTGCTTTGAGAACATTTCATTTCATTCCATTTTTAC
TGTGGGGATTCCAGTTTCTCTCAGAAGTCCTGAGCAACTATGATGTTCCA
GATAATATCCCAATTCTGCTGTTTACACTGAGCGCCTACTGCTGCTGGGG
AGGTCAGCAGACACATTCAATTCTTAACACACCCAAGCCTTATAAAACAC
TCTGGTGGAAAGTTTACTCTCTTCAAGGTGACGGAAGCATTGAGAAATAA
TGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_j13.g1 MSMg01no503_j13.g1 CHROMAT_FILE:
MSMg01no503_j13.g1 PHD_FILE: MSMg01no503_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:55 2005
         (529 letters)



>mm_chr15_67309712_67310640
          Length = 929

 Score =  961 bits (497), Expect = 0.0
 Identities = 521/529 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggatgctatatggggaccagggaggtggtgggtagcactcatgaactattttccaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atggatgctatatggggaccagggaggtggtgggtagcactcatgaactattttccaatc 670

                                                                       
Query: 61  atccctctttctttttgagatagagaaactaagagtagaagtaggtaaggatgtctaaat 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 669 atccctctttctttttgagatagagaaactcagagtagaagtaggtaaggatgtctaaat 610

                                                                       
Query: 121 tcaagctcaaaatgatagatgtggacatcaactccacatccctgtctagctcagacagcc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcaagcccaaaatgatagatgtggacatcaactccacatccctgtctagctcagacagcc 550

                                                                       
Query: 181 tgggtggccattattccccaagctcctctttcaacagaggaaactgcacagagtggattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   
Sbjct: 549 tgggtggccattattccccaagctcctctttcaacagaggaaactgcacagagtgaaagc 490

                                                                       
Query: 241 atcatccacaagagtatctagtacaggatgctgctggaaatggatgcaaaccaattcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atcatccacaagagtatctagtacaggatgctgctggaaatggatgcaaaccaattcatc 430

                                                                       
Query: 301 aagaactgccttttgccttgggaattagtcacagctcctcatttcctggacttcctggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 429 aagaactgccttttgccttgggaattagtcacagctcctcatttcctggactttctggca 370

                                                                       
Query: 361 aaacacttatttgctctgtgctttgagaacatttcatttcattccatttttactgtgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaacacttatttgctctgtgctttgagaacatttcatttcattccatttttactgtgggg 310

                                                                       
Query: 421 attccagtttctctcagaagtcctgagcaactatgatgttccagataatatcccaattct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 attccagtttctctcagaagtcctgagcaactatgatgttccagataatatcccaattct 250

                                                            
Query: 481 gctgtttacactgagcgcctactgctgctggggaggtcagcagacacat 529
           ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 249 gctgtttacactgagtgcctactgctgctggggaggtcagcagacacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)