BAC Information

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BAC

Clone NameMSMg01-503L23
Chromosome15 (Build37)
Map Location 99,130,901 - 99,131,309
singlet/doubletsinglet
Overlap genePrpf40b
Upstream geneOlfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136
Downstream geneFmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503L23.T7 (MSMg01no503_l23.b1)MSMg01-503L23.TJ (MSMg01no503_l23.g1)
ACCAG578790AG578791
length736744
length of high quality
(start - end)		609 (55 - 663)530 (84 - 613)
definitionCHROMAT_FILE: MSMg01no503_l23.b1 PHD_FILE: MSMg01no503_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:07 2005CHROMAT_FILE: MSMg01no503_l23.g1 PHD_FILE: MSMg01no503_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTATCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCG
AGGATCCGCGGAATTCTCTATTGTCTACCTTCAACTAAGTGTACTGTTCC
TATCCTCTGGAGAGTTTATCTGTATGGAATGTCAGAAATGACTTGCATAG
GAGATACCAATTTTATGTTCTACTATTTCACCTTAAGCTGCTTTAAGAGC
CTTTAATGTGTGTGTGTGTACACACATTATTATGTTATGTGCATTGGTGT
TTTGCCTACATGTGAAGGTGTCAGAAGCCCTAAAAATGGAGTTACAGATA
TATGTAAGCTGCCACGTGGGTGCTGGGAATCAAACCAGGGTCCTCTGGAA
GAAGCAGCTAGTGCTCTTAACCACTGAACCATTTATCCAGCCTCTTAAAC
CTACGACGTAATCATCCTTCATTCTTATCAGGCCCAGCACCACCATGTTA
TCTAGTCATCTGTTGAAGACAGACTTGGAGTCACTCTCTAGAGCCTTCTT
GATATATCACCCAGCTCTCTCAGTTTAACCTCCAAAAGAGTTCTTCCATC
TAGGTATTCTTTCCATTTCTTCTCACACTTCTTGCCCAAACCACTTTTCC
CATCTGATCTACAATGTGGCCTCCCAAACTGTTATCCTCATATCCACTTC
TATCTGTACCCACAATGCCCTCCTAAATACACATCAGACCCATAAGCACC
TGCATAGAATTCTCCATTGGTTTTCCACTGTTCTGN

CCTATTTTTTCTATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGAAAAAACAGAAA
CATTCCCCCTTTTCCCCATATTAAGTATCTGAACAGGATCATGGCATGTG
CCAATAAGTGGATCCTTTTTATCTGCCCTAGACACTATTATATCCAGTTT
TTTGTTTTTTGTTTTTAAATAAAAATGTGACTTAAATAATGTGCACAGGG
ATATAATTCCCCCCTTCTTTGTTTTTAAAGAAGCTATAGTTTTTAAAGTT
TTACAATACCTTGTCTTTGAGAATTATAAAATATCTCAGTAACATGTGTA
ACATTAAATTGTTGACAAAACATCTCAAATCTTTGGCTGTAATAGCCAGT
TTTAATTTGATTTAGAGCACCAAGCAAGCAAAAAAAAAAAAACCAAAAAA
AACATCAACACAGGCAATGACTAACTATACTTTTAGTTGCTTTTCTTATT
AAAGTAGTTGTAATTAGAAAGACTAAAAAGGTATCAATAGTCATATGTGC
ATATTTTATTTTTTTTTAATTAAAAATGAGTATCCATTTGCAATAATTGA
TTAAGTATAAGTCCTCGAGAATTAACACCAATGTGTGGAACAGGTAGAAA
CTGAGGACACTGAGAGCAAATCTTTACAATATGACATTTATTTATTTATT
TTATTTAAAGTACCAATTATTATTTTTAGCCCTTACTAATTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_l23.b1 MSMg01no503_l23.b1 CHROMAT_FILE:
MSMg01no503_l23.b1 PHD_FILE: MSMg01no503_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:07 2005
         (609 letters)



>mm_chr15_99130901_99131909
          Length = 1009

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctctattgtctaccttcaactaagtgtactgttcctatcctctggagagtttatc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gaattctctattgtctaccttcaactaagtgtactgttcctatcctctggagagtttatc 350

                                                                       
Query: 67  tgtatggaatgtcagaaatgacttgcataggagataccaattttatgttctactatttca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtatggaatgtcagaaatgacttgcataggagataccaattttatgttctactatttca 290

                                                                       
Query: 127 ccttaagctgctttaagagcctttaatgtgtgtgtgtgtacacacattattatgttatgt 186
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 289 ccttaagctgctttaagagcctttaatgtgtgtgtgtatacacacattattatgttatgt 230

                                                                       
Query: 187 gcattggtgttttgcctacatgtgaaggtgtcagaagccctaaaaatggagttacagata 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gcattggtgttttgcctacatgtgaaggtgtcagaagccctaaaaatggagttacagata 170

                                                                       
Query: 247 tatgtaagctgccacgtgggtgctgggaatcaaaccagggtcctctggaagaagcagcta 306
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 169 tatgtaagctgccacgtgggtgctgggaatcaaaccagggtcctctggaagaagcagcca 110

                                                                       
Query: 307 gtgctcttaaccactgaaccatttatccagcctcttaaacctacgacgtaatcatccttc 366
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 109 gtgctcttaaccactgaaccatttatccagcctcttaaacctacgccgtaatcatccttc 50

                                                            
Query: 367 attcttatcaggcccagcaccaccatgttatctagtcatctgttgaaga 415
           | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 49  agtcttatcaggcccagcaccaccatgttatgtagtcatctgttgaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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