BAC Information

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BAC

Clone NameMSMg01-505J10
Chromosome15 (Build37)
Map Location 98,350,096 - 98,350,418
singlet/doubletsinglet
Overlap gene2310037I24Rik
Upstream geneLOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1
Downstream geneLOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505J10.T7 (MSMg01no505_j10.b1)MSMg01-505J10.TJ (MSMg01no505_j10.g1)
ACCAG580190AG580191
length756743
length of high quality
(start - end)
595 (77 - 671)322 (322 - 643)
definitionCHROMAT_FILE: MSMg01no505_j10.b1 PHD_FILE: MSMg01no505_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:32 2005CHROMAT_FILE: MSMg01no505_j10.g1 PHD_FILE: MSMg01no505_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAT
CCGCGGAATTCTCATTTTCCGTATAGGTTTAGATTTTTTTAAAACCTATT
TTAATAAGGGTTTTTTTTTTAATGCTTCCACCCCACCCCACCTTGGGTCG
CTTCCAACCTCTGTCTGTCAAGATTCAGCCCTGTCAGGATAGAAATGGAA
TCAGCAGGAATGGCACAATCCAGCAGAAACCACCAGCCCTCTGCTGCCAA
ATCAGCATGAGTCAGCAGCAGCCACCAGGACCAGCCAGGAAGCCAGGAGC
AATTCTCCACTGTGCTTCTTCTCTTTTTGAACTAAAGATCAACAAAGATG
AAAACTAGAGACCAACCAAGTGTTGCAAAGCTAGCTAAGCAAGTGTGTCA
CCACTGTCCGTCGAGTCCTATGTATACTCTCTCCGAACATCACGTGTCCT
CCCACGGGTCTTGCTTCGGCAAAACGCTATGTGAAGTGGCCTCAGGAGTC
TGTATCAGCCAAACACCATGTGAGTTTGTATCACCTGACATATCCAGAAA
TGTCCACTTCAAAAGTGGCTGCCTAAAGAAGACACACCACCAGTTGAAAT
GGCAATGTGGGTGGGGGGAAATGTCACAAGGCCTCACCCCCAGATGAAAT
TAAAGCCTATTGAGAGAATCCGTCTTTTCCAGGGGTTATCCAGTTATTTA
TCCAATCTTGAGTGGTCAGCTTTAAACACGTATGGTGGGGGAGGGTATGG
AACAGN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTACCCAAAGAATTCCAGGGAGTAGCGTGATTCCCAAGTAGAGTG
CAAAAGTGCCCAAGATGCCATAAAATGGAAATACCCGCTTTAATAAAACA
CCACAACCCAAAGCAACTTGAGTAGAAAAGGACTTGTTTCACCCCTTACT
TCAAGCCGCAGTCCGTCACCGGGGGAAGTCAGCTGGGAAGCTGGATGCAG
GAGCTGATAGAGAGGCATAAAACAACTTTTGCTTTTGAATGCTTGTCCGT
ACTAATTTTCCTGATGATTCGCAGAACTCCTAATGGTTCTTAATCCTCAA
GAGGGGGCATCCGTTTGTTTGAGTGAAAGGTGATAGATACATTGTCTCTT
TAAGGGAGCGTTCATCACTGGAGTTATTCTAGAATCAAGGGGTGGGAGGT
TACCATGGCTCTTACTGAAGACTAGCAGTTATACACTGTAGCTGTTGGTT
TCAAGCAGACGCCTAGAGAACTGTCTTCCTGTGGTTTATTAGCTACTCTG
GACTTCAGTAGAGAATGACTATTTCATTTGGAAGAAACAACCCTTGTTCT
CTCTGGTTTCACAGCCTCAGTAATTCTGGTTCTTTGGATCAGCAGCATCC
TGAGGAAGCAACCAGCATGTTAGCTACTTTATCTCTCTGCTCTGTCAGAG
TCATGCGTCAGGCCCATTGGAGGAGTCTCTAACCAAAGTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_j10.g1 MSMg01no505_j10.g1 CHROMAT_FILE:
MSMg01no505_j10.g1 PHD_FILE: MSMg01no505_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:32 2005
         (322 letters)



>mm_chr15_98349896_98350618
          Length = 723

 Score =  586 bits (303), Expect = e-172
 Identities = 318/323 (98%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaactcctaatggttcttaatcctcaagagggggcatccgtttgtttgagtgaaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cagaactcctaatggttcttaatcctcaagagggggcatccgtttgtttgagtgaaaggt 464

                                                                       
Query: 61  gatagatacattgtctctttaagggagcgttcatcactggagttattctagaatcaaggg 120
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 463 gatagatacattgtctctttaagggagcgttcatcactcgagctattctagaatcaaggg 404

                                                                       
Query: 121 gtgggaggtta-ccatggctcttactgaagactagcagttatacactgtagctgttggtt 179
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atgggaggttacccatggctcttactgaagactagcagttatacactgtagctgttggtt 344

                                                                       
Query: 180 tcaagcagacgcctagagaactgtcttcctgtggtttattagctactctggacttcagta 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 343 tcaagcagacgcctagagaactgtcttccagtggtttattagctactctggacttcagta 284

                                                                       
Query: 240 gagaatgactatttcatttggaagaaacaacccttgttctctctggtttcacagcctcag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gagaatgactatttcatttggaagaaacaacccttgttctctctggtttcacagcctcag 224

                                  
Query: 300 taattctggttctttggatcagc 322
           |||||||||||||||||||||||
Sbjct: 223 taattctggttctttggatcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space:   223482
Effective search space used:   223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)