NAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTATGTTTATCTTAACAAATCAGAAGAGCTTAAAACATCAACT
CTGTGCCTGCTCATTGGATGGCAAGTACCACATATATAAAATATGTTCTT
CCTGTTACAATAGATGTTTTGAATCTGGTAGGGAATTTTAAACAAGAAAA
GTGCTGATAAAGTTTTTATTTCTCAGCCAAGTTACCCATGGTGCTACAGG
TTAATTTTACTAAAGATATTAAATATCTGTTAACTGTTCTTGCACTCTCT
GTCTTTGTGTACACTGTCTTTTTTCTTACAATGAGAACTTTACTTATACA
GTCTTAAATAAAGACTGCTTGACTCATCCTGTAGATCAAGGGGAAAGGAC
CCCGGGTGAAGGAAGCTGGTAACCCTTCCTGAGGCCCTACACCATCCTCG
GAGGTTTACTGCCAGTAAGGATCTCACTTGTACTTTCCTTTGTTTCTGCA
TTCACTCCCTGCGTGCCAGCACTGTGGCTGCACTTACAAATGATAAAAAG
GACAAGAGCGTCACAATCCTGAAGATCTGCCAGCTGGCTCTGAGACTCCC
CGTGGAAACCACACTTAGCTGCCATAGGTTGTACTGCGCTGTAATTCTAG
ATATCACTGTTCAGCGCTCTATGGGGGTTGCAACTGCACCAGAGTGGAGC
TGGACAGCAGTACCACGGTGGTACCACCTGAATTACACATTAGCACTCCA
GTGCAN

NCCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAATGGAGGT
GACACTATAGAATTTTCTGAAAAATTCAGAACTCTTCAGCTGGGGAATGG
TGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGC
GTGAATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCT
TTACAAGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCT
ATCTTAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGAACTTGAAC
TTTTTCTAGTGTTAGGAGTTCNTTTGTTCCTTTTCACATGTTATCAAGCG
GTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGA
AGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACAAA
ATAAGTATACAGGCCTTTCCACGGGTCTTGAACCTGAGGAAAAGTTTAGG
TCAGGTAAGAATACCTGGGGAGAGATTGGAAGGAAGGAGAAGGAAAAAGA
AAAGAAAAAAGATCAATTAGCGGAGGTCTCTAGGAGAAGGAGCCTATACT
CATCACTAGGTGAGCTCAAGGAGCCAGTTCTTAATAGTTCTGAATCAGAT
GAAAAGGCTATTATGGCCTGGAAGGCGCTCTCCAGCGCAGGTGAAGCCAC
TGGACAACTAACAAAGATCGTCCAGGGACCTCANGAGTCCTTCTCAGATT
TTGTGGCCAGA

Query= MSMg01no505_l11.b1 MSMg01no505_l11.b1 CHROMAT_FILE:
MSMg01no505_l11.b1 PHD_FILE: MSMg01no505_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:41 2005
         (639 letters)



>mm_chr15_27786459_27787496
          Length = 1038

 Score = 1067 bits (552), Expect = 0.0
 Identities = 618/640 (96%), Gaps = 3/640 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaagagcttaaaacatcaactctgtgcctgctcattggatggcaagtaccacatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaagagcttaaaacatcaactctgtgcctgctcattggatggcaagtaccacatatat 260

                                                                       
Query: 61  aaaatatgttcttcctgttacaatagatgttttgaatctggtagggaattttaaacaaga 120
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||
Sbjct: 261 aaaatatgttcttcctgttacaatagatgttttgaatctggtaggccattttaaataaga 320

                                                                       
Query: 121 aaagtgctgataaagtttttatttctcagccaagttacccatggtgctacaggttaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtgctgataaagtttttatttctcagccaagttacccatggtgctacaggttaattt 380

                                                                       
Query: 181 tactaaagatattaaatatctgttaactgttcttgcactctctgtctttgtgtacactgt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tactaaagatattaaatatctgttaactgttcttgcactgtctgtctttgtgtacactgt 440

                                                                       
Query: 241 cttttttctta-caatgagaactttacttatacagtcttaaataaagactgcttgactca 299
           |   |||| || ||  ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 caagtttcataacac-gagaactttacttatacagtcttaaataaaggctgcttgactca 499

                                                                       
Query: 300 tcctgtagatcaaggggaaaggaccccgggtgaaggaagctggtaacccttcctgaggcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctgtagatcaaggggaaaggaccccgggtgaaggaagctggtaacccttcctgaggcc 559

                                                                       
Query: 360 ctacaccatcctcggaggtttactgccagtaaggatctcacttgtactttcctttgtttc 419
            |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 560 -tacaccatcctcggaggtttactgccagtaaggatctcacctgtgctttcctttgtttc 618

                                                                       
Query: 420 tgcattcactccctgcgtgccagcactgtggctgcacttacaaatgataaaaaggacaag 479
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 619 tgcattcactccctgcgtgccagcacagtggctgcacttacaaatgataaaaaggacaag 678

                                                                       
Query: 480 agcgtcacaatcctgaagatctgccagctggctctgagactccccgtggaaaccacactt 539
           ||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 679 agcttcacgatcctgaagatctgccagctggctctgagactctctgtggaaaccacactt 738

                                                                       
Query: 540 agctgccataggttgtactgcgctgtaattctagatatcactgttcagcgctctatgggg 599
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 739 agctgccataggttgtactgcgctgtaattctagatatcactgtacagcgctctatgggg 798

                                                   
Query: 600 gttgcaactgcaccagagtggagctggacagcagtaccac 639
           |||||||| |||||||||||||||||||||||||||||||
Sbjct: 799 gttgcaaccgcaccagagtggagctggacagcagtaccac 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space:   646612
Effective search space used:   646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)