BAC Information

Click to search

BAC

Clone NameMSMg01-506B11
Chromosome15 (Build37)
Map Location 5,605,500 - 5,606,100
singlet/doubletsinglet
Overlap genenone
Upstream geneC6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
Downstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506B11.T7 (MSMg01no506_b11.b1)MSMg01-506B11.TJ (MSMg01no506_b11.g1)
ACCAG580569AG580570
length749753
length of high quality
(start - end)
279 (336 - 614)651 (83 - 733)
definitionCHROMAT_FILE: MSMg01no506_b11.b1 PHD_FILE: MSMg01no506_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:09 2005CHROMAT_FILE: MSMg01no506_b11.g1 PHD_FILE: MSMg01no506_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTTCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAC
CGCGGAATTCTCACTTTTTGCATAACAAATGGCAGAGAAGCACTTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCTACTGTT
GGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTACCATTTTTTTCCCGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCTCA
GAAACTTAGGATACCCAAGAAATAAGATACAATTTGCTAAACGCATGAAA
CTCAAGAAGAACATACAAAGGGGACACTTTGCCCCGTCTTAGAAATGGG
TTTTTTCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTCAAATCTATACT
GTTTGTAACTAGCTCTAATCTCATGGCCAACATTTCAACTCAAATCTGAA
TGAAGCTCACCAAACATGGATTATCTCCATAATGTGCATCATGGTTGCCA
TAGTCTTAGAAACACTGGGCAAACGCTATAGCACTGCATGTTGAGACTAT
TTTCAGCAGTGTGATAACAACAATAGGCACAAAACCACAATGACCATTCT
AGGACCCAACGGAGGACAATTGTTACAGTGTGTTAGATGGAACAGGACAT
CAGAGAGCTAGACAACCTTCTGACACCTACTGGGAAAGCTTCGTCAATAT
GTATTTTGTATTACAAAAATAGTTTAACAAGAAAGTAAATTTATGAATAT
GGAGGCTTTGAATAATGAAGGTGGCACATGGCACTGGAGAAACATCTCAG
TGGTTAAAAATATTCACTGCCCTTGCCGAAACTTAAGCTCAGTTCCCAGA
ACCTACATGGTAGCTCACAACTATCTATAACTTCAGTTCAGCGGATCCAA
TACCATCTGATGATCTCCTCAGGCAGACATGTGATGCACGCACATACATG
GAAATACATACTTATACATGTAAAATAAAATACAATATTTTAAAAAATAA
AAATGTTGGCTATCTACATAAATTATTTTATCTGCATGTATAGTGCTATG
GAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_b11.g1 MSMg01no506_b11.g1 CHROMAT_FILE:
MSMg01no506_b11.g1 PHD_FILE: MSMg01no506_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:10 2005
         (651 letters)



>mm_chr15_5605500_5606550
          Length = 1051

 Score = 1015 bits (525), Expect = 0.0
 Identities = 582/601 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttcaaatctatactgtttgtaactagctctaatctcatggccaacatttcaactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcttttcaaatctatactgtttgtaactagctctaatctcatggccaacatttcaactca 542

                                                                       
Query: 61  aatctgaatgaagctcaccaaacatggattatctccataatgtgcatcatggttgccata 120
            |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 541 catctgaatgaagctcaccgaacatggattatctccataaggtgcatcatggttgccata 482

                                                                       
Query: 121 gtcttagaaacactgggcaaacgctatagcactgcatgttgagactattttcagcagtgt 180
            ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttcttagaaatactgagcaaacactatagcactgcatgttgagactattttcagcagtgt 422

                                                                       
Query: 181 gataacaacaataggcacaaaaccacaatgaccattctaggacccaacggaggacaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gataacaacaataggcacaaaaccacaatgaccattctaggacccaacggaggacaattg 362

                                                                       
Query: 241 ttacagtgtgttagatggaacaggacatcagagagctagacaaccttctgacacctactg 300
           ||||||||||  | ||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 361 ttacagtgtgggaaatggaacaggacagcagagagctagacaaccttctgacagctactg 302

                                                                       
Query: 301 ggaaagcttcgtcaatatgtattttgtattacaaaaatagtttaacaagaaagtaaattt 360
           |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 301 ggaaagcttcgtgactatgtattttgtattacaaaaatagtttagcaagaaagtaaattt 242

                                                                       
Query: 361 atgaatatggaggctttgaataatgaaggtggcacatggcactggagaaacatctcagtg 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataaatatggaggctttgaataatgaaggtggcacatggcactggagaaacatctcagtg 182

                                                                       
Query: 421 gttaaaaatattcactgcccttgccgaaacttaagctcagttcccagaacctacatggta 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 181 gttaaaaatattcactgcccttgcggaaacttaagctcagttcccagaacctacacggta 122

                                                                       
Query: 481 gctcacaactatctataacttcagttcagcggatccaataccatctgatgatctcctcag 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 gctcacaactatctataacttcagttcagcagatccaataccatctgatgatctcctcag 62

                                                                       
Query: 541 gcagacatgtgatgcacgcacatacatggaaatacatacttatacatgtaaaataaaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcagacatgtgatgcacgcacatacatggaaatacatacttatacatgtaaaataaaata 2

            
Query: 601 c 601
           |
Sbjct: 1   c 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)