Query= MSMg01no506_f18.b1 MSMg01no506_f18.b1 CHROMAT_FILE:
MSMg01no506_f18.b1 PHD_FILE: MSMg01no506_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:32 2005
(544 letters)
>mm_chr15_25341204_25342149
Length = 946
Score = 944 bits (488), Expect = 0.0
Identities = 529/544 (97%), Gaps = 6/544 (1%)
Strand = Plus / Plus
Query: 5 gaattcagagaggtttcgccctctgaaaaggtaaccattttctcatgctggcttccgtag 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagaggcttagccctctgaaaaggtaaccattttctcatgctggcttccgtag 264
Query: 65 gccatcttgttcgttcaaatgccaagatgtcttaatctgtcccaggtggtatcaccaggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccatcttgttcgttcaaatgccaagatgtcttaatctgtcccaggtggtatcaccaggg 324
Query: 125 gcaacaccatcgctggtctgagactaatgttatttggtcaaatgccccgcaataaagatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaacaccatcgctggtctgagactaatgttatttggtcaaatgccccgcaataaagatc 384
Query: 185 tgtcaggcaaacagctaattggtgcaaactaagaaaaccaccatccctgcagtgcgttac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtcaggcaaacagctaattggtgcaaactaagaaaaccaccatccctgcagtgcgttac 444
Query: 245 atttgaacagaaagaacaatggacagttctagaaaggaaaatagcgctgtgtgtttaaaa 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 atttgaacagaaagaacaatggacagttctagaaaggaaaatagcactgtgtgtttaaaa 504
Query: 305 ataaatatattaaattcacaattccccctcccttatttttttttttttttgatgattgaa 364
|||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 ataaatgtattaaatccacaattccccctcccttattttttttttttttt-atgattgaa 563
Query: 365 atctgtaaaaaaaagaaaaaaaaa-tgggtaagatgtgaaaccttaaggtgggaggggaa 423
||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 564 atctgtaaaaaaa-gaaaaaaaaaatgggtaagatgtgaaaccttgaggtgggaggggaa 622
Query: 424 acaagaccgcgaccgagccgcgcggagggggggggg---tggcatttatgtccaaaggtt 480
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 623 acaagaccgcgaccgagccgcgcggagggggggggggggtggcatttgtgtccaaaggtt 682
Query: 481 tcgtgaaacatttagggcaaacgcctttgttcctgggctcgggaggggagtgggtggatg 540
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 683 ttgtgaaacatttagggcaaacgcctttgttcctgggctccggaggggagtgggtggatg 742
Query: 541 gatg 544
||||
Sbjct: 743 gatg 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 946
Length adjustment: 10
Effective length of query: 534
Effective length of database: 936
Effective search space: 499824
Effective search space used: 499824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_f18.g1 MSMg01no506_f18.g1 CHROMAT_FILE:
MSMg01no506_f18.g1 PHD_FILE: MSMg01no506_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:32 2005
(592 letters)
>mm_chr15_25481903_25482894
Length = 992
Score = 1056 bits (546), Expect = 0.0
Identities = 582/594 (97%), Gaps = 2/594 (0%)
Strand = Plus / Minus
Query: 1 aataaacatcagtgcctgtttggatatgaagtctcctcccctccactaaggctcaggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aataaacatcagtgcctgtttggatatgaagtctcctcccctccactaaggctcaggcat 880
Query: 61 tgaacatctgatccctgatgcaggtaatgttcagaggtggggcttctgggaagtgatcaa 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 879 tgaacatctgatccctgatgcaggtaatattcagaggtggggcttctgggaagtgatcaa 820
Query: 121 tcaccc-cc-cccccgtcagtggattaattctgtagcgcatttatgacctgatgctctga 178
|||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tcacccaccgcccctgtcagtggattaattctgtagcgcatttatgacctgatgctctga 760
Query: 179 ctggagtgtgctgagaaggccggctggtaaggtgggatgtggatcactggatgaaacgca 238
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 759 ctggagtgtgctgagaaggccggctggtaaggtgggatgttgatcaccggatgaaacgca 700
Query: 239 tacctttgaaggatacatcctgttccctacctcttcctctctgtccctctgcttccagct 298
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 699 tacctttgaaggatacatcctgttccctatctcttcctctctgtccctctgcttccagct 640
Query: 299 tccactaggtaagaagtttctctctaccgagtcctgctgtcatgatatctaggctcatct 358
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 639 tccactaggtaagaagtttctctccactgagtcctgctgtcatgatatctaggctcatct 580
Query: 359 gaggccaatagtaatagatccagtcaatttgacacggagatctgtaagtctaccgtgggc 418
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 579 gaggccaatagtaatagatccagtcaatttgacacggagacctgtaagtctaccgtgggc 520
Query: 419 tctacctttacatggtttcatacagatattttgtcaagacaaacaagacaaatcaaagcg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tctacctttacatggtttcatacagatattttgtcaagacaaacaagacaaatcaaagcg 460
Query: 479 aacaaaacacaactaaccatcaccaccaaaacctcaaaccaaataaaactgtcaaactga 538
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 459 aacaaaacacaactaaccatcaccaccaaaacctcaaaccaaataaaaccctcaaactga 400
Query: 539 aaaccaaaaacctaaacaaaacctacctaacacaatttccttctgctacttgaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaaccaaaaacctaaacaaaacctacctaacacaatttccttctgctacttgaa 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
