Query= MSMg01no506_n04.b1 MSMg01no506_n04.b1 CHROMAT_FILE:
MSMg01no506_n04.b1 PHD_FILE: MSMg01no506_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:09 2005
(324 letters)
>mm_chr15_57889418_57890140
Length = 723
Score = 603 bits (312), Expect = e-177
Identities = 321/324 (99%), Gaps = 1/324 (0%)
Strand = Plus / Minus
Query: 1 cagataattcggcacagctggggcatagtgagatggtttggatgaagttgattcattgtt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 523 cagataattcggcacagctggggtatagtgagatggtttggatgaagttgattcattgtt 464
Query: 61 ttaaaagtattttaagtttgcaagacacagtttttttaaaagccactcttagaaccccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttaaaagtattttaagtttgcaagacacagtttttttaaaagccactcttagaaccccta 404
Query: 121 gaggtagaggcagggtcctggggccagggactcttgtcaggatgtagttgagcctctagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaggtagaggcagggtcctggggccagggactcttgtcaggatgtagttgagcctctagc 344
Query: 181 tccttcagtgagctacctactctctagttcttcctttaaaaatgtgttcattctcagata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tccttcagtgagctacctactctctagttcttcctttaaaaatgtgttcattctcagata 284
Query: 241 ttcattgtacatgtgtagtgcgcttcataaagacgtttccatattctttttttttttaga 300
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttcattgtacatg-gcagtgcgcttcataaagacgtttccatattctttttttttttaga 225
Query: 301 tattttcttcatttacatttcaaa 324
||||||||||||||||||||||||
Sbjct: 224 tattttcttcatttacatttcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space: 224910
Effective search space used: 224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_n04.g1 MSMg01no506_n04.g1 CHROMAT_FILE:
MSMg01no506_n04.g1 PHD_FILE: MSMg01no506_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:09 2005
(514 letters)
>mm_chr15_57820510_57821417
Length = 908
Score = 826 bits (427), Expect = 0.0
Identities = 490/515 (95%), Gaps = 11/515 (2%)
Strand = Plus / Plus
Query: 1 caggtagagagaaaccaagtgcaaaggtcaggagtgcaaaggt-agggggaggtgggtgt 59
||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
Sbjct: 201 caggtagagagaaaccaagtgcaaaggtcaggagtgcaaaggtca-ggggaggggggt-t 258
Query: 60 ccgagaggtggggagacgccaccatctacctatccagtgggaccccaaggtgttgggggg 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 259 ccaagaggtggggagacgccaccatctacctatccagtgggaccccaaggtgtcgggagg 318
Query: 120 tcaaggatggaggcagcaaggccagccactgtgtgtgccttgtacattggatgtaagagt 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 319 tcaaggatggaggcagcaagg-----cactgtgtgtgccttgtacattggatgtaagagt 373
Query: 180 gagactagcatttccccaattgggtcacaagaccctgagggtccccaagacttcctagtg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 374 gagactagcatttccccaattgggtcacaagaccctgagggtccccaagacttcttagtg 433
Query: 240 gttctgtgatgctctgctttttctgagctcttatctgcacggggaaaataaaaacattct 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 434 gttctgtgatgctctgctttttctgagctcttatctgcatggggaaaataaaaacattct 493
Query: 300 tattgtcccccttgacataggatctcacgtagtttctgatcatcctgtccctacctccca 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgttgtcccccttgacataggatctcacgtagtttctgatcatcctgtccctacctccca 553
Query: 360 agcactggggttacaggcatgccccaccacacccagtttgcacactgctaggacttgaac 419
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 554 agcactggggttataggcatgccccaccacacccagtttacacactgttaggacttgaac 613
Query: 420 atgggacttcctgcataccaggtggtcgctctatcaatggactacatcttattacccccc 479
||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||
Sbjct: 614 atgggacttcctgcataccaggtagtcgctctatcaatgaactacttcttaatacccccc 673
Query: 480 cccaaacgattattttctatgcttctaactcacag 514
||||||||||||||||||||||||||||||||
Sbjct: 674 ---aaacgattattttctatgcttctaactcacag 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 908
Length adjustment: 10
Effective length of query: 504
Effective length of database: 898
Effective search space: 452592
Effective search space used: 452592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
