BAC Information

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BAC

Clone NameMSMg01-507G19
Chromosome15 (Build37)
Map Location 60,291,023 - 60,291,558
singlet/doubletsinglet
Overlap genenone
Upstream geneNsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832
Downstream geneLOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507G19.T7 (MSMg01no507_g19.b1)MSMg01-507G19.TJ (MSMg01no507_g19.g1)
ACCAG581578AG581579
length1,394780
length of high quality
(start - end)		---536 (79 - 614)
definitionCHROMAT_FILE: MSMg01no507_g19.b1 PHD_FILE: MSMg01no507_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:58 2005CHROMAT_FILE: MSMg01no507_g19.g1 PHD_FILE: MSMg01no507_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAAGGGAGCTTGTAGGGTGGGCGGCGGGGTGAGAGTAGAGAGAGGAATG
TGGCTTTTCCCCAATTCGGGTGGTGGGGGTGGTGGGCTGTGGGCGCNCGA
TACCTCTCACAACCGTCCGAGAGGCGATACAAATGAACGGAGGTGTCTGT
TTCTGTCATGCAGCGGATGCATCGCACTACGCGCTCATACACGGCTCAGA
TAACACTCGCGGTGAGTATGAAAAAGTGATAGTATAACGGATGTATTGTA
GTAAAGAGTGTAAGTGAGACGTGAAGAGACGATATATAAAGAATAGAGGA
CAGGAATATTAGAATATGTATGTATTTGAGCTTGAGTTATCGATGATGCT
TTAGTGATGGCGGAGGGGTCGCGTGTCGCCGGGAGGTGAGGTGGCGAGGG
GGTTGAATGTGCGTGTTGTGTGGATGGTATTTATGGATCGAGAAACTGTC
GTAGTGCCTGGTTCGCTCGAGTCGCTGGTTTAGCAGTATCACTTCTTCGT
TTTTCATTTTTGCTCTTCCTCGTACAATCATGAGCCGATTACTGCCTTAT
TATCTACTACCCTTCCTTTCTGGTGCGCTGGGGGATGGTCGCGAGNGCGT
AAGGCCGGAATGCGCGAGACTCGTACAGATACTCGAGAAGACGTGAGACT
GTAGAATTAACAAGATAAAGAGATTATGATAATATAACGAGTGTGGTCCT
CAGGGAGAATATACGATAAGCCAGTATGAGGAACGCACGAGCGTGATTAG
GAACAGAGAAAACTATGATGCAGAGATAGAGAGTCAATCAGTACTATTAT
GTAATATGTGATGTTACATGGACGAAGGAGTGATTGGTTTAAAAGAGTGA
TGCCTCTGCGACAGAGACAACTGAGAGTGTCGACAGCTATACAATGTGCA
ACACGAAATGGAACCGACTGGATAATAATGATCTGAGACGAAGACAATGA
GAGACGACTGATAGAGTGTTCGGTCGGCGAATGGTTATAGTCATATGGAG
TGGTGTACGGTGCCGTTGTCATGNCGTACACCGGACAGGACACAGCATGT
GCTGTAATAGACGTTTAAAGTGAGCACGCTGATCCATCACGGATGGAGNG
TAGCACTCGCGCGATATCTATGATAGACGGCTGTGCATTATACATCTACT
ATCTCCACAAGACGCACCACGGGTAACAGTGTACGAGTAGGTTGTCATGT
ATCCTACGCCGCGNTGTTGTTGCGAGTAGCAGCGTCACGGAGAGAGCTAG
AGATAGAGCAATGGAACGAGTAGAGCACAATGGCGCAGAGAGACAATGCG
CGTGAAACGTTTACAGAGTACGCTGTGCCCGTCGCGGGAGTGGTACGCAG
GATATGAGAAGCGTGCGAGTAGTATATATATAGACGATTCGATC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTT
ATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGATGGAGTCTTTTGCC
TTGCAGAAGCCTAAAAGGCACTTTTATGGGAATAAAATGGAGCAATGGAG
AAATGACTCAGAAGTAAAGAGTATGACTGCTTTTTCAGAGGACCGAAGTT
CTATTCCCAGCATCCAAAGGCAGCTCACAACTGCCTATGATTCTAGTTGC
AGTAGATCATATGTACTCGGGTGGCCTTCATGGGCACCAGAGCTAACATG
TATGTTCACATATATGGACATATCCCAGATGCATGTAATTAAAAATGGGA
AAATAAATTTTAAAAGGCTATGGAATGGCAAATCAGTCATTGGAAGAAAG
TATCAGGAAACACAATCTTCATACAAGACATATCAAATTTCTGCAAAAGA
GGTCTTACTCTTCAAAAGTAAGAAACGGGTTAAAAGTAGGCAAAATACCT
GGACAATCATTTCACCAAAGATGAATAATAANTAAAGGTGTTTAACAAAA
TATAGAATAGATTATCTCTTGAGGAAATTGCAAGTTAATTTCCTGAGATT
ACTGGGAGAAGTTACTGGACACTAATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_g19.g1 MSMg01no507_g19.g1 CHROMAT_FILE:
MSMg01no507_g19.g1 PHD_FILE: MSMg01no507_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:58 2005
         (536 letters)



>mm_chr15_60290823_60291758
          Length = 936

 Score = 1006 bits (520), Expect = 0.0
 Identities = 532/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttcagttctgagccccattttttaatggggttatttgattttctgaagtccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttcagttctgagccccattttttaatggggttatttgattttctgaagtccacctt 260

                                                                       
Query: 61  cttgagttctttatatatgttggatattagtcccctatctgatttaggataggtaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatgttggatattagtcccctatctgatttaggataggtaaagat 320

                                                                       
Query: 121 cctttcccaatctgttggtggtctttttgtcttattgatggagtcttttgccttgcagaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cctttcccaatctgttggtggtctttttgtcttattgatggtgtcttttgccttgcagaa 380

                                                                       
Query: 181 gcctaaaaggcacttttatgggaataaaatggagcaatggagaaatgactcagaagtaaa 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctaaaaggcacttttatgggagtaaaatggagcaatggagaaatgactcagaagtaaa 440

                                                                       
Query: 241 gagtatgactgctttttcagaggaccgaagttctattcccagcatccaaaggcagctcac 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtatgactgctttttcagaggactgaagttctattcccagcatccaaaggcagctcac 500

                                                                       
Query: 301 aactgcctatgattctagttgcagtagatcatatgtactcgggtggccttcatgggcacc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 aactgcctatgattctagttgcagtagatcatatgtacttgggtggccttcatgggcacc 560

                                                                       
Query: 361 agagctaacatgtatgttcacatatatggacatatcccagatgcatgtaattaaaaatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagctaacatgtatgttcacatatatggacatatcccagatgcatgtaattaaaaatgg 620

                                                                       
Query: 421 gaaaataaattttaaaaggctatggaatggcaaatcagtcattggaagaaagtatcagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaataaattttaaaaggctatggaatggcaaatcagtcattggaagaaagtatcagga 680

                                                                   
Query: 481 aacacaatcttcatacaagacatatcaaatttctgcaaaagaggtcttactcttca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacacaatcttcatacaagacatatcaaatttctgcaaaagaggtcttactcttca 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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