BAC Information

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BAC

Clone NameMSMg01-507I03
Chromosome15 (Build37)
Map Location 36,724,511 - 36,725,165
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
Downstream geneZfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507I03.T7 (MSMg01no507_i03.b1)MSMg01-507I03.TJ (MSMg01no507_i03.g1)
ACCAG581641AG581642
length734730
length of high quality
(start - end)
648 (85 - 732)649 (82 - 730)
definitionCHROMAT_FILE: MSMg01no507_i03.b1 PHD_FILE: MSMg01no507_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:05 2005CHROMAT_FILE: MSMg01no507_i03.g1 PHD_FILE: MSMg01no507_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGATTCAGTAAGAAATTCGCCTATTCAGTGACATTCAGAATTG
ACTCTGGTATTACACTATCACTTTGAATAAAAGCTAAGTCACTGCCCTAC
ACAGGAATTTACCATCATCTAAGAAGAAGGAAGTTTGAGACCTAAGGAGG
AACCAGAGTAGATACTTAGAACTATAGATAGCTGAGTTACACCCATATAC
ATGTATTTACAATGGCCTAGGGGGAAGGTGGACTATACAATAGACTAAAA
TAGGAACTATGGCAAGGGCACGAAGCCCTTGATTTTGGCTTCTAAGATTA
AGTGGACCTTAGGTGGAGCTCTTTTTGATCCCAGTTGTTAACAATGAATT
CTATCCCAGGTGGTTCCTGTCAGACCTTCTGTGTTTGTATTCCTCTGTTT
TGTGTAAGAATCCAGTAACCTCTTTGTACCTTGCTGGTGTATCACCCAAC
TTCCTTATTTTCTTCTGTATAAAAAGTTTGATGCTCGATTTGACAAATTA
CATTCAGATTCTACACAACCTCTTCTGTGTGCATCTGTCTGTCGTTTCAT
CCGACGCTTTGCCCACCTGCGACTAGAGACCCATTCCATGCAGACAAAGG
GGCCCAGAGGGTCTGCGGCAGAATGGGAAGGACCCAGCTTTAGAAACAGG
CAGGTAAGCAGGGTGGCTGCAGACAGTGAAAGGG
TAAAANCTCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCCAGAGCCCCCTGGA
AGACTTCATGACAAGTATTCTTTCCCTACCACTGTCTTTCATCAGAATGT
TGGTTACATTGTTTGAATCACAAGTTTGTTGTACAAATTATAATTTGCCT
GAAATGACAGCTAGGTAGAGATTTGCCTGTGACCAGTTCAGTGTCGCTCC
CCTCGCCAACCGCCCTCCCCCCTCCCAACACACACACCGGTTTCCACAGC
AACAGATAACATGCTAAGCAGATGAGCAAATTAATTCAGGTTTTATCTCC
AAGATACTGAAGTCAACTTACTTTGGCTGTAATGTAAATTCTTTCAGGGA
GTGACTCCTTAAAATGACTATTTCAAAAGCTTTTATGTTTGCAGTTTTGT
AGTAGGTGCTAGAAATTAGAAGATACTAGGTTAAATCTTTTGTAAAATGG
AAATGTCTGTTAATGTCTGTAATACACGTCTATATGGAATATACACCTCA
GGGAAAGTTAAGAGATTTCTCTGCATAAATTGCAGACTTGTTTTGGAAAA
TAGTTTGGGCTTTTGCCTTGTGCATTAACTAGCAAGGTTTCTTTGTGTTT
TAATAAACCAAAAGGTGCTTTTAGTTTTTACAAACTCCAATCAACATGTT
GCCTAATAAAGGCATAATAAGGCTGCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_i03.g1 MSMg01no507_i03.g1 CHROMAT_FILE:
MSMg01no507_i03.g1 PHD_FILE: MSMg01no507_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:05 2005
         (649 letters)



>mm_chr15_36724311_36725365
          Length = 1055

 Score = 1224 bits (633), Expect = 0.0
 Identities = 648/655 (98%), Gaps = 6/655 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccccagagccccctggaagacttcatgacaagtattctttccctaccactgtctttca 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 agccccagagccccctggaagacttcatgacaagcattctttccctaccactgtctttca 260

                                                                       
Query: 61  tcagaatgttggttacattgtttgaatcacaagtttgttgtacaaattataatttgcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagaatgttggttacattgtttgaatcacaagtttgttgtacaaattataatttgcctg 320

                                                                       
Query: 121 aaatgacagctaggtagagatttgcctgtgaccagttcagtgtcgctcccctcgccaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgacagctaggtagagatttgcctgtgaccagttcagtgtcgctcccctcgccaacc 380

                                                                       
Query: 181 gccctcccccctcccaacacacacaccggtttccacagcaacagataacatgctaagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccctcccccctcccaacacacacaccggtttccacagcaacagataacatgctaagcag 440

                                                                       
Query: 241 atgagcaaattaattcaggttttatctccaagatactgaagtcaacttactttggctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagcaaattaattcaggttttatctccaagatactgaagtcaacttactttggctgta 500

                                                                       
Query: 301 atgtaaattctttcagggagtgactc-cttaaaatgactatttcaaaagcttttatgttt 359
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 atgtaaattctttcagggagtgactcacttaaaatgactatttcaaaagcttttatgttt 560

                                                                       
Query: 360 gcagttttgtagtaggtgctagaaatt----agaagatactaggttaaatcttttgtaaa 415
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 561 gcagttttgtagtaggtgctagaaatttgacagaagatactaggttaaatcttttgtaaa 620

                                                                       
Query: 416 atggaaatgtctgttaatgtctgtaatacacgtctatatggaatatacacctcagggaaa 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggaaatgtctgttaatgtctgtaatacacgtctatatggaatatacacctcagggaaa 680

                                                                       
Query: 476 gttaagagatttctctgcataaattgcagacttgttttggaaaatagtttgggcttttgc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttaagagatttctctgcataaattgcagacttgttttggaaaatagtttgggcttttgc 740

                                                                       
Query: 536 cttgtgcattaactagcaaggtttctttgtgttttaataaaccaaaaggtgcttttagtt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttgtgcattaactagcaaggtttctttgtgttttaataaaccaaaaggtgcttttagtt 800

                                                                  
Query: 596 tttacaaactccaatcaacatgtt-gcctaataaaggcataataaggctgcaagg 649
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 tttacaaactccaatcaacatgtttgcctaataaaggcataataaggctgcaagg 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1055
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1045
Effective search space:   667755
Effective search space used:   667755
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)