BAC Information

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BAC

Clone NameMSMg01-508I13
Chromosome15 (Build37)
Map Location 69,337,994 - 69,338,605
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508I13.T7 (MSMg01no508_i13.b1)MSMg01-508I13.TJ (MSMg01no508_i13.g1)
ACCAG582425AG582426
length7451,551
length of high quality
(start - end)
613 (74 - 686)---
definitionCHROMAT_FILE: MSMg01no508_i13.b1 PHD_FILE: MSMg01no508_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:28 2005CHROMAT_FILE: MSMg01no508_i13.g1 PHD_FILE: MSMg01no508_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCG
CGGAATTCCTAGAGATTACGAGCTGCCTCACATTCACTTTTACTGAGCAC
CATGCCAGTTGAATACCAGGCTCTTAAAGGCCATAAGAGCTCTTGGGACA
ATGTAATAGAAGGAGTATCTTGCACATAACTGTAAAGATTACTCTTGGTT
GTTGATTGAGATCTAGAATTACTGGGAAATGGATGTTTATGTATGCATGT
AGGGGACTAAGTTTCTTACCTTAACAGAGGTGGGAATACCAGCCCACTAT
GAGTAGATGCAGTTGGTGGGTAATTATCTTGGGTCATAAGTAAGGGAAAA
GGAAACTGAGCAGCAGAATTCATTGCTCTTTTTTGTCCTGATTGAAGTTG
CAATGCGACCAGTAGCCTCAAACTCCTGTTCTCCTCCCTTCATTCCTATA
ATGCTCGGTAACCATGAACTGTGAGTCACAATAAAGCCAATCTTCCTTAA
TTTGCTTTTGTCAGAGTATTTTATCATAGCAACATGAGGAGAAGCCATGA
CAGCATCTCTGTGACCACAGATCATGTGACTCAGTGATTATTTCACCATC
TCTACAGCTAGGCTTCTCATACAACCTGCAGACAACATCTTGAGTTATGT
TCTTCACTCAAAATCATGGTTCTTCTATATTCTCTGTGTCTCAGAATATG
ACACCTCATGCGCTCAACTGCTCAGGCAAAAGTATTTCATGTTTT
GTCTGTGGGAGTGTGTGGGTGTCTTCTCTATTTGTGCGTGTGCGCGGCGG
AGGGCGTCGTTTTCACTCTGAGACGCGGATGTGGGAGCGCAGACACNCAC
TACACACTCTCTTCTCTCTCAAAAGTATGCGCGCGCGTTTGTGTTGACCA
CGATGTCGCCGGTGCGCGCTGTACGGCGCGCGTNGTGTGCGTGCGGGGGC
GCGCACGTAATCTCACTACATTGNTTATAGACGCCACGGCGGCACAACGA
CAGATAATATAGAAGAGTCGAGGGTGGGTGTGTGNGGACTGCGTCGTGGC
TCTGCGCGGCGCGCGAGTATGCGGTGGTCGGTCGCATAGAGCGATTGCTA
TATGATCGGCACACGTGTTGGTNGAATAGACATGTCGCGTCGTTGCGGCG
TCGTGTGCGCGGTCGAGGTGGTGGTGTGGGTTGGTCGTGAGTGAGTCTCT
ATATACACACTATCTATCATCTCCGTATAGCTTTATATACATATATTAAC
TTAGAGGGCTCAGACGGAAGAGTATCTGTCGACTGGGCCTCTGCCAACGC
CCGTGTGAAGGTATATTACAGTGTCACAACTCACGGCGTCAGCCAACAGA
GGTGTTGACGTCTCGCTGCGTTTTGTTGATAGCCGGCCGCACGGATAGTG
TCCCCACTACAGTATATGTCAGCTCAAGACCGCTAAGAANCGAAAATGAA
AGAGAAAGATAAAGACGCGATGTATAGATCTCGACGACATGTCCAACAGT
TGTTCTGATGAGTGTGGACTAGAGTTGTTGATGACGTCGTCCGCGAGTAA
TGCGCGACTATTAATTTACGAGGCTGCGGTAGACGCGCGAGTGCGTCACA
TAGCACTCTGATAGCGAGGCTGCAGCGCGTTGCGCCCGTCACGACTGACG
ATCCCTTCACNCGATGCGCGCGCTTTTCCTGGGCAGCATTGTATATACAC
GACGAGTCAATGATCTGACGCGCGGACGTGNTATCGGGGTACCGTCGAGA
CGCCGCGCTCCAGCTGCAGGTAGTCTACTGACTTGTGTGAGTGGAGCCAT
AATCTGTTGATCTAGCCGTACCAGAGTAGCGGAGCTATAGTGTATCGACA
ACGCGTCACACAGAGTTACACCGTAGTGTGAGGAGTGAGTATGGAGCGAC
AGCGANGACTCACATGGCGATGTGTGGATGCGAGCTTGTATCGCGCCGTG
GTGCTGTATACTGCGGATGATNATTACTGTGATATGTGTTAATCATGAGT
GACGCAGCAGGTTACGGCTGCGCAGNGTCGCGNGACGTAAGAGTCGCGAC
TGAGGCAGTTCGCGACACAGACTCGCATGAATGTCAGTATGTGTTGCAGC
GATCGCGCGCCAGCTCGTATGTATGTGGCTCCATCATCAGACGTCCTATN
TGTACAGAGCACGTGATCNCAACATACGCAGTAGGTAGTCGAGCGCAGAT
GCGTATAAGACACATCATNAGATGATGTATATCACGACATAGATGAGATA
TGTGTAACCCACGACTATATACGACCGCGACCGTGTGTAGACATGTGTGT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_i13.b1 MSMg01no508_i13.b1 CHROMAT_FILE:
MSMg01no508_i13.b1 PHD_FILE: MSMg01no508_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:28 2005
         (613 letters)



>mm_chr15_69337794_69338806
          Length = 1013

 Score = 1123 bits (581), Expect = 0.0
 Identities = 605/613 (98%), Gaps = 2/613 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctcacattcacttttactgagcaccatgccagttgaataccaggctcttaaaggcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tgcctcacattcacttttactgagcaccatgccagttgaataccaggctcttcaaggcca 260

                                                                       
Query: 61  taagagctcttgggacaatgtaatagaaggagtatcttgcacataactgtaaagattact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagagctcttgggacaatgtaatagaaggagtatcttgcacataactgtaaagattact 320

                                                                       
Query: 121 cttggttgttgattgagatctagaattactgggaaatggatgtttatgtatgcatgtagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggttgttgattgagatctagaattactgggaaatggatgtttatgtatgcatgtagg 380

                                                                       
Query: 181 ggactaagtttcttaccttaacagaggtgggaataccagcccactatgagtagatgcagt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ggactaagtttcttaccttaacagaggtgggaataccagcccactatgggtagatgcagt 440

                                                                       
Query: 241 tggtgggtaattatcttgggtcataagtaagggaaaaggaaactgagcagcagaattcat 300
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 441 tggtgggtaattatcttgggtcataagaaagggaaaaggaacctgagcagcagaattcat 500

                                                                       
Query: 301 tgctcttttttgtcctgattgaagttgcaatgcgaccagtagcctcaaactcctgttctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctcttttttgtcctgattgaagttgcaatgcgaccagtagcctcaaactcctgttctc 560

                                                                       
Query: 361 ctcccttcattcc-tataatgctcggtaaccatgaactgtgagtcacaataaagccaatc 419
           |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcccttc-ttccctataatgctctgtaaccatgaactgtgagtcacaataaagccaatc 619

                                                                       
Query: 420 ttccttaatttgcttttgtcagagtattttatcatagcaacatgaggagaagccatgaca 479
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 ttccttaatttgcttttgtcagagtattttatcacagcaacatgaggagaagccatgaca 679

                                                                       
Query: 480 gcatctctgtgaccacagatcatgtgactcagtgattatttcaccatctctacagctagg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcatctctgtgaccacagatcatgtgactcagtgattatttcaccatctctacagctagg 739

                                                                       
Query: 540 cttctcatacaacctgcagacaacatcttgagttatgttcttcactcaaaatcatggttc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttctcatacaacctgcagacaacatcttgagttatgttcttcactcaaaatcatggttc 799

                        
Query: 600 ttctatattctct 612
           |||||||||||||
Sbjct: 800 ttctatattctct 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)