BAC Information

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BAC

Clone NameMSMg01-510G21
Chromosome15 (Build37)
Map Location 44,262,318 - 44,262,735
singlet/doubletsinglet
Overlap geneEny2
Upstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1
Downstream genePkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510G21.T7 (MSMg01no510_g21.b1)MSMg01-510G21.TJ (MSMg01no510_g21.g1)
ACCAG583868AG583869
length756761
length of high quality
(start - end)
418 (330 - 747)597 (80 - 676)
definitionCHROMAT_FILE: MSMg01no510_g21.b1 PHD_FILE: MSMg01no510_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:01 2005CHROMAT_FILE: MSMg01no510_g21.g1 PHD_FILE: MSMg01no510_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCG
GAATTCTGGCCATTTTACCATAATGAATTTCAGAACTGTTTTGACCAATG
GAACTATTTAAGCCCATCTAATTAAAATATTGAAAATTTGAAGGTGCTTT
TATGCATCATTTAGTCCAGGCACTTAGATATTGTTGCAAGATGTATCTTT
TCCTCTCTCAGCTCTGCTTTCGTCTTTGTTGTCTTTATTCTCAAACAGGC
CCTACCCACAGGTGGCAGAGATTAGCAGTTCCAAATTTACATTCCACCAG
CTCAGAGTACCTATCTCAGCATTTTTTCTCACTTGATTACCATCTTGCTT
AGGTAATAGGCAAGTTATGCGCAGCCGTGCCCAGGTCATATTTCACATTA
CAAGAACCTTGTCCAGATTTATACAGGGAGAATGACACAGTAGTGTTTGC
TTGTTTTTCTCTTACAGAGCAGAAACTGAGTGAGTTACTTGCAAAAGCAT
ACGTTTCTGTCTTTACCTTTGGATAATGGGAATTAGTAAGGATTTTTGGA
AAGGGAGTGACTAGATTACATTTTCATTGTAGATACTGTTCTATCAATGG
GAATGTAGATTTGAAGGGACCAAGATAGATGGTAGAAAAATTAATTAGAT
GATGTGGTGAAGGTAGAAAGTAGCAAAATGGAAGGGAGAACAAAGGAGAA
ACAGACCTCCATGTGAAGAAAGAGATAGCAGATGCTGTGCTGGGGTGTTG
ACAGTA
ACGATGCAGTGGGAGGTCTGGNGGNCGCCTGGCTTTTCAAATCAGGTNGA
ACTATAGAAGGATTTCCCGAAATACATAGTGTCTGTGGTTATCTACACAA
AACCTGTATAAAATAAGCTACTCAAAATCTCAGCATAAATGGAAGGGAGT
ATGTTATGGCTGGAAGAGTTCATGAATCCCAAAATACCACCAAGGAGCTG
TTTCCAATGCAATTGCATTAGGGTCTCTTTATTACATGCTCAGCTTGGGC
TCTACTCCAACCCAACCCTGACAGAACAGGGCAGGAAGGTAGAGCTGCCT
TGAACCCTCAGCAGGGCAAGAATTTTTTTGAAATGGGAGCAAGTGAGGGG
GGTATTTTAAAGCAAGACCATGAACATTCACAAATGGTCTGAAAGTACAT
CTGAAACAATCAGATTAATCTTTCATTAACTGTGGCTAGGAAGAAGCTAG
GGAGTAACTCTGGGATATGGGCCAAGGACAAGCCATGGGGTCCTTCCTGG
TACTTGAGTGCAAGCTTGGGTTCTGCAGGTTAAGTTCTCAGGCTTTTTTT
TTTTTTTTTTAAGATGGAGGCTGTTCCAAGATAAAGTAGGTTTGGCCTCT
CAGGTTTCAGCTCAAGGTTAGGTGCTGTTCATAGTTGATGGCTACTAAAG
GAGAGTGTCTTCCTTGTTTTTGCTGTTTGGATTGTGGCCACTGGAAAGTT
GGCTGTATTCCAGTGGATGGCTACATAACTGTGTGCCTATTGCTAGCATT
AATTGGAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_g21.b1 MSMg01no510_g21.b1 CHROMAT_FILE:
MSMg01no510_g21.b1 PHD_FILE: MSMg01no510_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:01 2005
         (418 letters)



>mm_chr15_44262118_44262935
          Length = 818

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttgattaccatcttgcttaggtaataggcaagttatgcgcagccgtgcccaggtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttgattaccatcttgcttaggtaataggcaagttatgcgcagccgtgcccaggtcat 260

                                                                       
Query: 61  atttcacattacaagaaccttgtccagatttatacagggagaatgacacagtagtgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcacattacaagaaccttgtccagatttatacagggagaatgacacagtagtgtttg 320

                                                                       
Query: 121 cttgtttttctcttacagagcagaaactgagtgagttacttgcaaaagcatacgtttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtttttctcttacagagcagaaactgagtgagttacttgcaaaagcatacgtttctg 380

                                                                       
Query: 181 tctttacctttggataatgggaattagtaaggatttttggaaagggagtgactagattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 tctttacctttggataatgggaattagtaaggatttttggaaagggagtgactagattat 440

                                                                       
Query: 241 attttcattgtagatactgttctatcaatgggaatgtagatttgaagggaccaagataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttcattgtagatactgttctatcaatgggaatgtagatttgaagggaccaagataga 500

                                                                       
Query: 301 tggtagaaaaattaattagatgatgtggtgaaggtagaaagtagcaaaatggaagggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtagaaaaattaattagatgatgtggtgaaggtagaaagtagcaaaatggaagggaga 560

                                                                     
Query: 361 acaaaggagaaacagacctccatgtgaagaaagagatagcagatgctgtgctggggtg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaaggagaaacagacctccatgtgaagaaagagatagcagatgctgtgctggggtg 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)