BAC Information

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BAC

Clone NameMSMg01-511G04
Chromosome15 (Build37)
Map Location 15,075,921 - 15,076,257
singlet/doubletsinglet
Overlap geneLOC100040033
Upstream geneLOC674819, LOC100040024
Downstream geneLOC100040046, EG239341, LOC100040087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511G04.T7 (MSMg01no511_g04.b1)MSMg01-511G04.TJ (MSMg01no511_g04.g1)
ACCAG584593AG584594
length723759
length of high quality
(start - end)
384 (50 - 433)337 (79 - 415)
definitionCHROMAT_FILE: MSMg01no511_g04.b1 PHD_FILE: MSMg01no511_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:14 2005CHROMAT_FILE: MSMg01no511_g04.g1 PHD_FILE: MSMg01no511_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAACTGACGAATCTCAAATGGCCTAAAAACACCTAAAGAA
ATGTTCAAAGTCCTTAGTGATAATAGAAATGAAAATCAAAACAACCCTGA
GATTCTACCTTACCCAGTCATAATGGCTAAGACTATTCTGATGACAACAA
ACCCTCTGATGACAACACACATTGGATAGGATGTGGAGAAAGAAGAACAC
TCCTCCATTGCTGGTGGGATTGCAAAATGGTAAAAACACTCTGGAAATCA
ATCTGGATGTTCCTCAGAAAATTGAAAATCGATCTATCTGAAGACCCAGC
TATACCACTCCTGGGCATATACCCAAAATATGCCCCACCATACCACAGGG
GCACCTGTCCCACTATGTTCATAGAGGCCTGATTTGTGATAGCCAGAAGC
AGGAAACAACCTAGATGTCCCATAATAGAATAATGGATACAGAAAATGTG
GTTCATTTCCACTATATACTACTACTCAGTTATTAAGAATGAACACATCC
CTGAGTTTTGTAGGCAAATGGATAGAACTAGAATATTTTCTTCTTGAGTG
ACACTAACTTCTGCCCCATAGGAATTTCATGCATATCCACTTCCTAATCA
ACTTGTATGTTCCCCCTTTTTATACCACTCATTGGAAAAACCAATAAATA
TCTTTTGGAGAAATCCCCTATGA
TGCTATTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCCTTATGTCTGAGAGC
ATCACACTTAAAATGACTTCTCTGGCTGAAGTCAAGTTACTTATTGGAAG
CTAAGTGGTTTGACTATCCTCACTAACACTCTCATTCACGGTCCACTGAG
TACACTAAATTCTGAATCTTATGACCAGTAGGAAAAGAATGACCCTTTCC
AGTGAACTGTATATAAGCAAAAGGGAGACATTGTTTCTAAAACAGTGTCC
AAATAAACATGAAACATTATAGCTCATGACTATTATCTCATTTCCATTCA
ACTAGAAAACAAAATATTATGGTGACTAAGGCAAACATGAAAACATGCAT
TTACCATTTATTAACTCACAGAAACCTACTTCTTAAAAATAAGAGGAATT
ATTAATTATACTATGTAATTACATGCAATTATTAGACATTGGTTTCTTAT
ACATATTTATTGCTAGATACAGATTTTTTTTTCATTTTATTTCTTTAAAT
GTTTTGAGCCATTTAACCTTGAAAAGGTCCTTTGAAATAAAATTTAGGCA
TTTCCAGAGATTCTTCTCGGGGACTTAAGTAGTTTAATATGAAGTTTTAA
TTTTAACAAAGTTTTCCTTTTCCCCACAAAACATTTCCTCGAATAGGTTT
TCCCCCAATAGAAAAATTCTTTCTTCCGGCTTCTAATAAAAAATAATATT
TGGTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_g04.g1 MSMg01no511_g04.g1 CHROMAT_FILE:
MSMg01no511_g04.g1 PHD_FILE: MSMg01no511_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:15 2005
         (337 letters)



>mm_chr15_15075721_15076457
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctcccttatgtctgagagcatcacacttaaaatgacttctctggctgaagtcaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctcccttatgtctgagagcatcacacttaaaatgacttctctggctgaagtcaagtt 260

                                                                       
Query: 61  acttattggaagctaagtggtttgactatcctcactaacactctcattcacggtccactg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttattggaagctaagtggtttaactatcctcactaacactctcattcacggtccactg 320

                                                                       
Query: 121 agtacactaaattctgaatcttatgaccagtaggaaaagaatgaccctttccagtgaact 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 agtacactaaattctgaatcttatgaccagtaggaaaagaatgaccttttccagtgaact 380

                                                                       
Query: 181 gtatataagcaaaagggagacattgtttctaaaacagtgtccaaataaacatgaaacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatataagcaaaagggagacattgtttctaaaacagtgtccaaataaacatgaaacatt 440

                                                                       
Query: 241 atagctcatgactattatctcatttccattcaactagaaaacaaaatattatggtgacta 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 atagctcatgactattatctcatttccattcaactagaaaacaaaatattatggtgacaa 500

                                                
Query: 301 aggcaaacatgaaaacatgcatttaccatttattaac 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaaacatgaaaacatgcatttaccatttattaac 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)