BAC Information

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BAC

Clone NameMSMg01-512A03
Chromosome15 (Build37)
Map Location 58,963,096 - 58,963,367
singlet/doubletsinglet
Overlap genenone
Upstream geneAtad2, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e, EG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330
Downstream geneEG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512A03.T7 (MSMg01no512_a03.b1)MSMg01-512A03.TJ (MSMg01no512_a03.g1)
ACCAG585068AG585069
length811734
length of high quality
(start - end)
277 (41 - 317)663 (72 - 734)
definitionCHROMAT_FILE: MSMg01no512_a03.b1 PHD_FILE: MSMg01no512_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:01 2005CHROMAT_FILE: MSMg01no512_a03.g1 PHD_FILE: MSMg01no512_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACAATGTTTTGCCTTTGATCTCATCCAAACTCAATGCATATTTATTATGT
ATTGACCTCATTTGGACCCAATGCATATTTATTAACTATTGACCTCATCC
CAACCCAATGCATATTTATTAAATATTGACTGTGTGTGAAGTACTAAGAC
GTAGTAGTGTAAAAGATGTAAGTATGCAGAAACAAGACTCCTGTTTGGAT
TTTCCTTCTTTGTGTATTTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTTTCNTTTTCCTTCNTCCTTTTTTTTCTTTCC
TCTTTTTCCCCTTTTTTTTTTTTGCGGTGGTGTGCGTCACGCGCGTCTCG
TTGTGTTCTCTACTTCTTTTTTTCGTGTCCTTTGTTTAACTGCTTCTTAT
TATCCGTTCGCTTCTTCTATTTCTGCCCGCTATACTTATTTCACACACAC
ATACCTCTTTAGTTTTTTTTCATGTATACTCGATGCTCTTAAGTTCCCCT
ATATTTATTTCGTTCTTCTTTCGTTTTTATTTCTACTACCTCTCCCTAAA
TATTATTTGCGTGTCTTACCTGTTCTGCTTTTGAGCTTCAATACTCCGCC
CTTTTGATGCTCGATTTTGATATTCACATCTTACAGCTATTATCGTTTTT
ATTTTATTTGGGTCTGTTGTAGGAGAGTATACTTCCGTCCGCCCAGCTTT
ATCTGTCCGTCTATATCGCGTTCACTCTCTTTTCATGTTTCTTTATCCTC
TTTCCATTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTTACCTATTCAGTAACATT
CAAATTTACTTCTAATAGAGCAGTGAAACTAATTAGGCATTACAAAGAAC
AGAGCCAAAATAGATCAGGTCTGCAGAGTGTTTACTTGGGACAATAGCCA
GTCTTACCCAGACAAGGGAATTCGCAATGGCCTAGTGAATAGGTGGGTTT
ACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAGGCC
CAAAGAAACAGCATATTCAGGCATTTACTAAGAACCCCTGGTAGTGGATT
TAACAATAGACTAGCATTACACCTGGCTCCCTTCTTAGTGGTAAACAAGG
CCTGGTCCCTGCCATCTTTTGATGTATACATTTCTTTTGTATTATGTCAC
TGTAACTTAGAGAGGATGTGTTTGCCTGGTTTCTTGTTACTCTTCTGTAT
AAAAAGTTTGATGCTGACTTTTACATTCATATTCTACACAATCTCTTGTG
TTGCTTCTGTTTGTCATTCATTTGCCAACTCCTTGTCCACCTGCAACCAG
AGACTCATCCTCTGCAGACAGGGACCAAAAAAGGTCTGCAGCAAACCTAA
TTCACAGAATGTGTCAGTACAGTAGCAACTGTAGGTGTTCCTCCAAGATC
CATGACGTCACTACTTTGGGTAGTTGGCTAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_a03.b1 MSMg01no512_a03.b1 CHROMAT_FILE:
MSMg01no512_a03.b1 PHD_FILE: MSMg01no512_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:01 2005
         (277 letters)



>mm_chr15_58962892_58963569
          Length = 678

 Score =  503 bits (260), Expect = e-147
 Identities = 269/272 (98%), Gaps = 1/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaatgttttgcctttgatctcatccaaactcaatgcatatttattatgtattg 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaatgatttgcctttgatctcatccaaactcaatgcatatttattatgtattg 264

                                                                       
Query: 65  acctcatttggacccaatgcatatttattaactattgacctcatcccaacccaatgcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctcatttggacccaatgcatatttattaactattgacctcatcccaacccaatgcata 324

                                                                       
Query: 125 tttattaaatattgactgtgtgtgaagtactaagacgtagtagtgtaaaagatgtaagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 tttattaaatattgactgtgtgtgaagtactaagacgtagtagtgtataagatgtaagta 384

                                                                       
Query: 185 -tgcagaaacaagactcctgtttggattttccttctttgtgtatttgtgagtgtgtgtgt 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcagaaacaagactcctgtttggattttccttctttgtgtatttgtgagtgtgtgtgt 444

                                           
Query: 244 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 275
           ||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 678
Length adjustment: 9
Effective length of query: 268
Effective length of database: 669
Effective search space:   179292
Effective search space used:   179292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)