BAC Information

Click to search

BAC

Clone NameMSMg01-512D06
Chromosome15 (Build37)
Map Location 34,085,480 - 34,085,782
singlet/doubletsinglet
Overlap genenone
Upstream genePgcp, 1700084J12Rik, Tspyl5, LOC675463, Mtdh
Downstream geneLaptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512D06.T7 (MSMg01no512_d06.b1)MSMg01-512D06.TJ (MSMg01no512_d06.g1)
ACCAG585218AG585219
length1,391733
length of high quality
(start - end)
---388 (72 - 459)
definitionCHROMAT_FILE: MSMg01no512_d06.b1 PHD_FILE: MSMg01no512_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:16 2005CHROMAT_FILE: MSMg01no512_d06.g1 PHD_FILE: MSMg01no512_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGGGCGCGCTGGAGATGTGACANAGATATGTATGTGTTCTCAAGACAG
AGAGTGACCGCGTGGGAGTGTTATNTATTGTTTGCTCGCAGAAAGCAGAA
AGGAGACAAACACNCNCACGCCGTTGTTGCTAGTGCGTTTGTTTGTGAGA
CGGGGATGTGAGACGTCGGTGGATCGTCGTTGCGACACATAATTATGGGC
TACATGTGTAGTATAGTGATAGATAGCCNCGCTGCCGCTGCTGGCGGCAA
TGTGATTGGACGCCGGTGAGAGTATCGGCTAGATGGCGGCTACATGCGAT
CAGCGCTCTCATACATACGGTAGATATATGATATCTCGCACCCGTCCCTC
ACGNTAGAAGATGCAATTGAGATCGTCGTGTCTGTGTTGGAGCGCGTGTG
TCCGGGCTGTTCGTACGCTATACAGGGCCGTCGTCGCCGCGCGGGTCGTC
GGTGNTGTGTGCAGGTGCGTTTGTTGCTGAGCGAAGTAGCGGCGTTAGCG
TCGCACCGTTGTTCGTCTGCCGTGCGTGTTNTTATTCTCCGCATCGACAC
GCCTGTCTTTTCGCGCGCGTGCGGGCTGTGCGCGGATCCATCTATGTGCA
CTCCCTTAGTATAATGTAGTACGGCGCGTGGAGACGCGCACATACGTTGG
TTATACACGGTCATGATGCGTAATGAATCCGACACTTTGCNCATCGCTCC
ACAGTCAGTAAGATATACGTGCACCTGACCGATGTAGNTAGTGCGCGGAC
GCGCGCGAGCAGACACGTATTATTGAATATCTATTCGTTGATATATACCA
TAACACCTCTCTATATGAGTGGGTACTACATACCAGCAGACGCAATCGAG
TGTCTATATGTATTATTAATATATGTTATGTCCGTNATATCCNCTCCTCA
TCATCGTCGGACCTGTTACTCGATCGCGTCGCACAGCGTCCGTGCCTCGT
GGCGCTGCTCGGTAGCAGATGTGATGAGCCGTCCGCACGACCTNAGTGCG
TTNCGGTCCGGTGCGCGCGCTTCGCTTCGTTATCGATTGCNCGTCGTGCG
TGTGAGAGATCACGACTAGTACGCTGCTATCCATGTGCGCCCCGGAAGTA
TGTGTCAGCAGGCGCAGAGAGTCGTCTCACGTACGTCGCAGATATGACTG
CGCAAGATAGAGATCGGTCTTCAAGTGTTCTCATTAGCCGTGTCTCTCGT
TTGTCCNATCGATATCTGGCGAGTATGATACAGGACTATGTACATACTAT
GCGCGNGCGCGCATACGCTATATGTATATGCGTCACACCACTCGACCGTC
CGATTTTCTCTCTGCCCACGCGACGCGTATAGAGACGGGCATAGTATGAT
CTGAATTATGTCAGTGGCAGCAGCATAGAGATGAATATAAG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGAACTCACCCACCATTTTCGATGAGGC
ATAAAGACCTGGGGGAGTACAGGCAGGCCTACCCCCAAATAACTCTTTTG
CAGTATGTTGATGACCTCCTTCTAGCTGCTCCAGATGAAGACAATTGCCA
TTTGATGACAGAGGCCTTGCGCAGACAACTAGACCAGATGGGATACCAGG
TGTCTATGAAGAAGGCACAATTCTGCCAAAGTGAGGTAACATACCTTGGG
TACATACTTAAGGGGGCAGAGGACAATGCCTGCTATCCCAGGCCAGAAAA
GAGACGATCTTCAACATCCCCATCTCCAAGACCTGGTATCAGACTCATGA
GTTCTTGAGCTTAGTGGGGGGAAGGGGGGTGTTTGTAGACTCTGGGTACC
TGGATTTATGGNAAGTCCCTCTATATGGCCACCAGGGGGCAGGAGAATAC
TTTGAACTAGACTTCCGATATGGACAAAGCTTTTCACATACTCTAGGAGA
CTTTCCTTGGGGCCCAGCACTTCCTCTTGTCTAAGCCCTTTCTCTTGCTC
TTAGACTATATCATATGCTTATCCAATTGCGTACTGACTCTAACCTTGTG
CCCTGTAAAAAAACAGCGGCTTGTCTGTCTAAAGGCAGGACCCTGTACCC
TTTCGTGGATTCCCCTTATTCTCTCTTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_d06.g1 MSMg01no512_d06.g1 CHROMAT_FILE:
MSMg01no512_d06.g1 PHD_FILE: MSMg01no512_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:17 2005
         (388 letters)



>mm_chr15_34084995_34085782
          Length = 788

 Score =  545 bits (282), Expect = e-159
 Identities = 300/308 (97%), Gaps = 6/308 (1%)
 Strand = Plus / Minus

                                                                       
Query: 82  gtatgttgatgacctccttctagctgctccagatgaagacaattgccatttgatgacaga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gtatgttgatgacctccttctagctgctccagatgaagacaattgccatttgatgacaga 729

                                                                       
Query: 142 ggccttgcgcagacaactagaccagatgggataccaggtgtctatgaagaaggcacaatt 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 728 ggccttgcgcagacaactagaccagatgggataccaggtgtctatgaagaaggcacagtt 669

                                                                       
Query: 202 ctgccaaagtgaggtaacataccttgggtacatacttaagggggcagaggacaatgcctg 261
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctgccaaagtgaggta----accttgggtacatacttaagggggcagaggacaatgcctg 613

                                                                       
Query: 262 ctatcccaggccagaaaagagacgatcttcaacatccccatctccaagacctggtatcag 321
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctatcccaggccagaaaagagacaatcttcaacatccccatctccaagacctggtatcag 553

                                                                       
Query: 322 actcatgagttcttgagcttagtggggggaag-gggggtgtttgtagactctgggtacct 380
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 552 actcatgagttcttgagcttagtgggggg-agagggggtgtttgtagactctgggtacct 494

                   
Query: 381 ggatttat 388
           ||||||||
Sbjct: 493 ggatttat 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)