BAC Information

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BAC

Clone NameMSMg01-512H07
Chromosome15 (Build37)
Map Location 83,193,064 - 83,193,669
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
Downstream genePacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512H07.T7 (MSMg01no512_h07.b1)MSMg01-512H07.TJ (MSMg01no512_h07.g1)
ACCAG585411AG585412
length718748
length of high quality
(start - end)
241 (45 - 285)603 (70 - 672)
definitionCHROMAT_FILE: MSMg01no512_h07.b1 PHD_FILE: MSMg01no512_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:37 2005CHROMAT_FILE: MSMg01no512_h07.g1 PHD_FILE: MSMg01no512_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTGTCAAGTGGAGATTCTCCAGATACTTAAAGTTACACTCATAA
GAATTTATCAAGGCCTAGGAAATAGGGGTGTTGTGGTATTGCAGTATTCA
TGAGAAGGTCTGCTAAAGCAGAACCCCTGGTGATGGGCTTAACAATAGAC
TAGCTTTACACCTGGCTCCCTTCTTAGTGGCAGCAGCCTGGTCCCTGCCT
TCTTTTGATGTATACATTCCTTTTGTATTATGTAACCTTGGTGGATTGTA
TCTCGTCTGGGTTCTTGCTTATTCCGGCTGGAAAAAAAAGCCGGAAGGCC
TCACCCGGACAAAAAAACTTTAAAATTTTTACCCAATCCCCTCCGGGTGG
GGGCCGNTTGGGANNAAATCCACAAATTTTTTTCTCCTTATTCTTTTCCC
ATTACTTTACTCCCTTCTCTCCTCTTCTTTTCTTGATCATTTTCTTTTAC
TCTTTTCTTTTTTCCTAGTCCTCTTTTCTCCTTTTTTTTTTTTCCCTTCA
CACCCTTTCTTCTATTCTTCTCTCCTCCTTTCTCTTTCCTTTTTTTCTTC
CTTTCTCCTTTTTTCCCGTCCCTTTTTCCTTCCTTTTTCCGTACCCTTTT
TTTCTCCTCCCCCCGCCCACCCTTTTCCATCAACTTGTCCATCTTTACTT
TCTTGTACTTACCTTACT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAACAGATAGGGCTATGTAGATAGGGAAA
AAAGAAAAAGAATAAGAAACCACAAAAATGCTCCCAAAATGATGTGACAA
AAGTTTTAGTTATTAAAAAGAAAATTATGCTGTAATTATTGTTCACTTCT
ATGCTGCTATGTAAAAAGTATCTCTATTGGTTTTTTCACAGGGACAAATG
CTACCTTATGGTAGTCACAGTGTGACAATGTTCCTTAAGTTAACAATGAC
AAGAAATCATTGCCACAGTTCTTTCCCAGAAGAGGAGCAGGGACACAGGC
CAGCTGCTGGAGGAAGTGGCACCAACAGAGGCCTGAGTCCCTGAGATGAT
CTGCAGAAGGTACCCTGACAAGGGTCAGGCAGCTGGGCACACCCTGCTGG
GCCTCTGGTCTGACTCCAGCCCTCTGCCTAGTCATTATTTCTCTTCACTT
CACTTCAGAGGCTTTTTCCCTCCCTCCCACTGTGGGGCTGCACCTCTCTC
TGGAGCCCACAGTGTGGGAAGAGGAAGGACATTTCCTCACTGGAGTGGCC
AGGGTAAAGAGGGAAGAAAGGCCTTCCTATACAAACATGTGACATCACCA
GCAAAAGCTGGACCAACTCATCTGCTCAAGCTTTTGCCTGCTAGTGTCAA
TGGGGAGGATGCTGGGTACCACATCTGTATGAGGAGGACTCCACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_h07.g1 MSMg01no512_h07.g1 CHROMAT_FILE:
MSMg01no512_h07.g1 PHD_FILE: MSMg01no512_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:37 2005
         (603 letters)



>mm_chr15_83192864_83193869
          Length = 1006

 Score = 1110 bits (574), Expect = 0.0
 Identities = 597/606 (98%), Gaps = 3/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagatagggctatgtagatagggaaaaaagaaaaagaataagaaaccacaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cagaacagatagggctatgtagatagggaaaaaagaaaaagaataagaaacaacaaaaat 260

                                                                       
Query: 61  gctcccaaaatgatgtgacaaaagttttagttattaaaaagaaaattatgctgtaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcccaaaatgatgtgacaaaagttttagttattaaaaagaaaattatgctgtaattat 320

                                                                       
Query: 121 tgttcacttctatgctgctatgtaaaaagtatctctattggttttttcacagggacaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tgttcacttctatgctgctatgtaaaaagtatctctattggttttttcacagggacaaac 380

                                                                       
Query: 181 gctaccttatggtagtcacagtgtgacaatgttccttaagttaacaa---tgacaagaaa 237
           |||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 381 gctaccttatggtaatcacagtgtgacaatgttccttaagttaacaacaatgacaagaaa 440

                                                                       
Query: 238 tcattgccacagttctttcccagaagaggagcagggacacaggccagctgctggaggaag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattgccacagttctttcccagaagaggagcagggacacaggccagctgctggaggaag 500

                                                                       
Query: 298 tggcaccaacagaggcctgagtccctgagatgatctgcagaaggtaccctgacaagggtc 357
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 tggcaccaacagaggcctgagtccctgagatgacctgcagaaggtaccctgacaagggtc 560

                                                                       
Query: 358 aggcagctgggcacaccctgctgggcctctggtctgactccagccctctgcctagtcatt 417
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 aggcagctgggcacaccctgatgggcctctggtctgactccacccctctgcctagtcatt 620

                                                                       
Query: 418 atttctcttcacttcacttcagaggctttttccctccctcccactgtggggctgcacctc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttctcttcacttcacttcagaggctttttccctccctcccactgtggggctgcacctc 680

                                                                       
Query: 478 tctctggagcccacagtgtgggaagaggaaggacatttcctcactggagtggccagggta 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctctggagcccacagtgtgggaagaggaaggacatttcctcactggagtggccagggta 740

                                                                       
Query: 538 aagagggaagaaaggccttcctatacaaacatgtgacatcaccagcaaaagctggaccaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagagggaagaaaggccttcctatacaaacatgtgacatcaccagcaaaagctggaccaa 800

                 
Query: 598 ctcatc 603
           ||||||
Sbjct: 801 ctcatc 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1006
Length adjustment: 10
Effective length of query: 593
Effective length of database: 996
Effective search space:   590628
Effective search space used:   590628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)