BAC Information

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BAC

Clone NameMSMg01-512J14
Chromosome15 (Build37)
Map Location 32,474,033 - 32,474,589
singlet/doubletsinglet
Overlap geneSema5a
Upstream geneCmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512J14.T7 (MSMg01no512_j14.b1)MSMg01-512J14.TJ (MSMg01no512_j14.g1)
ACCAG585521AG585522
length744748
length of high quality
(start - end)
599 (44 - 642)557 (73 - 629)
definitionCHROMAT_FILE: MSMg01no512_j14.b1 PHD_FILE: MSMg01no512_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:49 2005CHROMAT_FILE: MSMg01no512_j14.g1 PHD_FILE: MSMg01no512_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCTAAGACTTTTATCATGAATGGGTGTTGGATTTTGTCA
AATGATTTTCTGCATCTAACGAGACGATCATGTGTTTTTTGTCTTTGAGT
TTGTTTATATACTGGATTACGTTGATGGATTTCCATATATTTACCCATCC
CTTCATCACTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGA
TGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAAGATTTTTGCATCG
ATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTT
TTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAGAATGAATTGGGCA
GGGTACCTTCTGGTTCTATTTTGTGTAATAGTTTGTGAAGAACTGGGATT
AGATCTTCTTTGAAGGTCTGATAGAGCTCTGCACTAAACCCATCTGGTCT
TGGGCTTTTTTTTTGGTTGGGAGACAATTAATGACTGCTTCTATTTCTTT
AGGGGATATAGGACTGTTTAGATCATTAACCTGATCTTGATTTAACTTTG
GTACTGGTATCTGTCTAGAAACTTGTCCATTTCATCCAGGTTCTCCAGTT
TTGTTGAGTATAGTCTTTTGTAGAAGAAACTGATGGTGTTTTGTATTTCT
TCAGGATCTGGTGTTATGTCTCCCTTTTCATTTCTGATTTTGTN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAGTGGTCCATGTGCTGTGAGGGGGC
ACTAGAGGGATCGAGTTGCTTGACAGTCATATCTGCACATAGCTATACAT
TCTTTGATAAGCACAACATATTTGATAGGGGAAGAGGAAATGATGAGATG
TTGTAAGATAAAACAGATAATTCAAAATAAAAGAACCCTAAAACATGTTT
TCTCACTTGAAGCCTGAAGGCTGTGCCCATGATCCCAAGTTGGTATTGTT
TATTCCCCATTAGGAAGTCTTTTCTGCAACTAAACTATGTTTTTCAGCTC
CCAATTGAAATAGGATCTTCTGAAAATGAAAAACAAGCTGATCCATGCAT
GGACCACAGGCACATATGTGCCATTTTACTATTGAAGTAGAATTATCCAA
ACAAAGACGGATGACTCTGATTACCAATCACAGAGGCCGTGTGGCAGCTG
GCTTTGGATGGCCTCTGAGATAGGGCCTCCAGCCCTATGACTGCTGGAGA
ATCAGAATTCAATAAGTCATCTTCATCCGTTTCCACAGTAAAGAAATGGA
ATAATAAGGGGAGAAGTTGATAAAATGTGGAAACCATAGACATTTCAATA
TGCTTCTCTGTAAAAGAAAACAGTTAAGAGCCCCCTGAAGTATCATTTAA
CCACACATCTGCCCATATTTCTAAGTGCTGATCCCCAGTACTACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_j14.g1 MSMg01no512_j14.g1 CHROMAT_FILE:
MSMg01no512_j14.g1 PHD_FILE: MSMg01no512_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:49 2005
         (557 letters)



>mm_chr15_32473833_32474789
          Length = 957

 Score = 1046 bits (541), Expect = 0.0
 Identities = 553/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagtggtccatgtgctgtgagggggcactagagggatcgagttgcttgacagtcatat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 attagtggtccatgtgctgtgagggggcactagagggttcgagttgcttgacagtcatat 260

                                                                       
Query: 61  ctgcacatagctatacattctttgataagcacaacatatttgataggggaagaggaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcacatagctatacattctttgataagcacaacatatttgataggggaagaggaaatg 320

                                                                       
Query: 121 atgagatgttgtaagataaaacagataattcaaaataaaagaaccctaaaacatgttttc 180
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 321 atgagatgttgtaagataaaccagataattcagaataaaagaaccctaaaacacgttttc 380

                                                                       
Query: 181 tcacttgaagcctgaaggctgtgcccatgatcccaagttggtattgtttattccccatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacttgaagcctgaaggctgtgcccatgatcccaagttggtattgtttattccccatta 440

                                                                       
Query: 241 ggaagtcttttctgcaactaaactatgtttttcagctcccaattgaaataggatcttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagtcttttctgcaactaaactatgtttttcagctcccaattgaaataggatcttctg 500

                                                                       
Query: 301 aaaatgaaaaacaagctgatccatgcatggaccacaggcacatatgtgccattttactat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatgaaaaacaagctgatccatgcatggaccacaggcacatatgtgccattttactat 560

                                                                       
Query: 361 tgaagtagaattatccaaacaaagacggatgactctgattaccaatcacagaggccgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagtagaattatccaaacaaagacggatgactctgattaccaatcacagaggccgtgt 620

                                                                       
Query: 421 ggcagctggctttggatggcctctgagatagggcctccagccctatgactgctggagaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcagctggctttggatggcctctgagatagggcctccagccctatgactgctggagaat 680

                                                                       
Query: 481 cagaattcaataagtcatcttcatccgtttccacagtaaagaaatggaataataagggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaattcaataagtcatcttcatccgtttccacagtaaagaaatggaataataagggga 740

                            
Query: 541 gaagttgataaaatgtg 557
           |||||||||||||||||
Sbjct: 741 gaagttgataaaatgtg 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)