Query= MSMg01no512_o16.b1 MSMg01no512_o16.b1 CHROMAT_FILE:
MSMg01no512_o16.b1 PHD_FILE: MSMg01no512_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:14 2005
(660 letters)
>mm_chr15_66347759_66348819
Length = 1061
Score = 1205 bits (623), Expect = 0.0
Identities = 647/655 (98%), Gaps = 3/655 (0%)
Strand = Plus / Plus
Query: 5 gaattccttcttttttgaaaagcctcactcttggttcacaaagacatttaaaaagtggat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcttttttgaaaagcctcactcttggttcacaaagacatttaaaaagtggat 264
Query: 65 atggcaccttcacaccgtggaaggcaatatgttttacttaatgcccaccattgtaaacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggcaccttcacaccgtggaaggcaatatgttttacttaatgcccaccattgtaaacat 324
Query: 125 tatttacattttaaaaaatattttctcagcaatgttgagaccagtattgatcaagcagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttacattttaaaaaatattttctcagcaatgttgagaccagtattgatcaagcagtg 384
Query: 185 gagcttcatagattaatcaagttgacacacagcattaacctgccagaggggctgtcaggg 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 gagcttcatagattaatcaagttgacacacagcattaacctgccagaggtgctgtcaggg 444
Query: 245 tatttgatagagtgtgaaatgcataccttgccaagggcagattcaggctaaaggtatgtt 304
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 tatttgatagattgtgaaatgcataccttgccaagggcagattcaggctaaaggcatgtt 504
Query: 305 ccccaatggttctttctgtcctcactatcctcaaggaggaattaacataaaatactgaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccccaatggttctttctgtcctcactatcctcaaggaggaattaacataaaatactgaaa 564
Query: 365 tttctgaacttatagttttattaaaaaatgcttttatttatgtatgcattatcttgtctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttctgaacttatagttttattaaaaaatgcttttatttatgtatgcattatcttgtctc 624
Query: 425 tgaagcatttttgacacttgagattgcacatttgattagtttttcagatacatgttcctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaagcatttttgacacttgagattgcacatttgattagtttttcagatacatgttcctt 684
Query: 485 gagagatgattttt-ccttcattaagaaacttcagggtttccagaaaacaaagagtgatt 543
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 gagagatgattttttccttcattaagaaacttcagggtttccagaaaacaaagggtgatt 744
Query: 544 atctag-tgaccaagaatttcaatgattaataaaatttgtttacagattaataagtggct 602
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atc-aggtgaccaagaattgcaatgattaataaaatttgtttacagattaataagtggct 803
Query: 603 ataaattatatgtagcttctagagcaacaaaataatgtctataataaagttcttt 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ataaattatatgtagcttctagagcaacaaaataatgtctataataaagttcttt 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_o16.g1 MSMg01no512_o16.g1 CHROMAT_FILE:
MSMg01no512_o16.g1 PHD_FILE: MSMg01no512_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:14 2005
(543 letters)
>mm_chr15_66476566_66477508
Length = 943
Score = 1019 bits (527), Expect = 0.0
Identities = 536/539 (99%)
Strand = Plus / Minus
Query: 1 ttttagaaagagatagtcaagacaaagtatctggacttatagatatataaacaagtgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttagaaagagatagtcaagacaaagtatctggacttatagatatataaacaagtgagg 680
Query: 61 atctttcacacagagaagtgatatgaaggtaagagatggaaataagcacactcctaacag 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 679 atctttcacacagagaagtgatatgaaggtaagagacggaaataagcacactcctaacag 620
Query: 121 tcaggctatattgccatgaatgtgagaacaaactaggtcagcttggacacattccatacc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcaggctacattgccatgaatgtgagaacaaactaggtcagcttggacacattccatacc 560
Query: 181 acacagatacaacaatgaattattcccttagggtttcacagtagaaaattaaaatgacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acacagatacaacaatgaattattcccttagggtttcacagtagaaaattaaaatgacaa 500
Query: 241 gattagccaaggaacacttgtggtacagacaacaaaaactcacttctcatccaggatata 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaatagccaaggaacacttgtggtacagacaacaaaaactcacttctcatccaggatata 440
Query: 301 tgtctgagtgtatgcataaacctttccatgcatatttagaaagtgattattactcttacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtctgagtgtatgcataaacctttccatgcatatttagaaagtgattattactcttacc 380
Query: 361 tgtcctctgaaagaattaattcatctaccataggaggtattatgatgcctagcatagagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtcctctgaaagaattaattcatctaccataggaggtattatgatgcctagcatagagc 320
Query: 421 tgattaaacgtaattctctagtctggcagtgacaatctgaagagtcagaatgaaaacaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgattaaacgtaattctctagtctggcagtgacaatctgaagagtcagaatgaaaacaaa 260
Query: 481 gctggaatgaaagaggtaagtaaaactgactcattacctccatgacttacaatgggctc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gctggaatgaaagaggtaagtaaaactgactcattacctccatgacttacaatgggctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
