BAC Information

Click to search

BAC

Clone NameMSMg01-513E02
Chromosome15 (Build37)
Map Location 22,657,228 - 22,657,647
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040351, EG545091
Downstream geneCdh18, LOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513E02.T7 (MSMg01no513_e02.b1)MSMg01-513E02.TJ (MSMg01no513_e02.g1)
ACCAG586019AG586020
length752765
length of high quality
(start - end)
415 (38 - 452)420 (68 - 487)
definitionCHROMAT_FILE: MSMg01no513_e02.b1 PHD_FILE: MSMg01no513_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:41 2005CHROMAT_FILE: MSMg01no513_e02.g1 PHD_FILE: MSMg01no513_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
CAATGCTCTGAGCAAGCAGGCAGACTTCCTTGGGTGGGCATCTAAGCCAC
TGACCCCACTCGACAGGGGGCAGGGTGGATAAGCCCACAACCAGGGACGA
CAACCTGTAGTGCCGGAGTTATGGGAGAGAGGGCTGAAGGAGAGAGTTTC
CCACGCAGGCAAGAGTCCTTAGTCCCAGCCTTGACTGGAGCACAGGAAGG
CCTTCCATTGGAAGATTAGAAACAGCTAATTACAGGAAATCCTATCCCAT
TGCCTTGATAAACAGGCACAGTCTATAATTTTAGAGCTTTATTGTAGAAA
GGCAGGAGGAAAGAGAAAAGGTGGAGAGAGAGAGCGGGGGATGAGAGGAG
AGGGGAGGAGAGAACAAGGAGAGAGAGAGAGAGGAGAGGAGAGAGAGGAG
AGTTATTGCTTCTCTTCTTTTTTAGTTAGTTGTTTTTTTTGCTTCTCTCC
TCCGTTTTTTTTTGCATTTGTCTTTTCACTTTGTTTTGTCTTTTGATTTT
CGTTATTCCCCCTTCTTTTTTCCGTTTTATGCGCTCTGTGTTTCTGTCTT
CTATGGCGTTTTTTATTTGCTTTTCTGTTTCTTTTGTGATATCGTATTTA
TCTTTTCCGCTCTATTCGTGGTACAGTAATTTAGTGTCTATCTTTGGACT
CTCCGTTTTTTTTTCCCCCCGTTTTTTCTTATTCCTTCTTCTTTCTTTTC
CN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAACCCAATATGTAGCAGAA
GCTGGCCTAGTCAGCCATCACTGAGAAGAGAGGCCCCTTGATATTGCAAA
CTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAGGGGGAGTGGG
TGGGTAGGGGAGCAGGGCAGAGGGTGGGTATAGGGAACTTTCAGGATAGC
ATTTGAAATGTAAATAAAGAAAATATCTTTTAAAAAAGAGTTAATGTTTT
CTATAAAATGGAAGCCACTGAGTGATCAATGCGTCATAGACAAGTTGTTT
TGTGAATCTTAATGTGACTTTAAGTTCTTAGTGTTCTTTGAAATTCAGTG
CTCTTGCAATTAGAAAATTATGGGAGAACATTGGTTGGGAGGATTTTACT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCTTTTTCTTTA
CCTTTTCTTTCTCCCTTTCGGTCTTCTTCCTTTTTTTTCTTTTTTCCATT
CGAATCTTTCTGTTTTTCTTTTCGCACCCACTTTTTTGATTGGCGCCTTT
ATTCTTTTTTTCTTCCCGTCCTCTTTTCTCCCTTTTCTTCTTTTTTTACT
CTTTTTTATTTTTATTTTTTTTCCACTTTTTTCCTCTCCTCTTTCCTTTC
TTTATTATATTTTTATAAATTTTATCTTTTTATTTTTTTTTCTATGACTT
TTTTATCTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_e02.g1 MSMg01no513_e02.g1 CHROMAT_FILE:
MSMg01no513_e02.g1 PHD_FILE: MSMg01no513_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:41 2005
         (420 letters)



>mm_chr15_22656846_22657665
          Length = 820

 Score =  781 bits (404), Expect = 0.0
 Identities = 416/420 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctgaacccaatatgtagcagaagctggcctagtcagccatcactgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tttgtttagctctgaacccaatatgtagcagaagctggcctagtcagccatcactgagaa 743

                                                                       
Query: 61  gagaggccccttgatattgcaaactttatatgccccagtacaggggaatgccagggccaa 120
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gagagggcccttggtattgcaaactttatatgccccagtacaggggaatgccagggccaa 683

                                                                       
Query: 121 gagggggagtgggtgggtaggggagcagggcagagggtgggtatagggaactttcaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gagggggagtgggtgggtaggggagcagggcagagggtgggtatagggaactttcaggat 623

                                                                       
Query: 181 agcatttgaaatgtaaataaagaaaatatcttttaaaaaagagttaatgttttctataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agcatttgaaatgtaaataaagaaaatatcttttaaaaaagagttaatgttttctataaa 563

                                                                       
Query: 241 atggaagccactgagtgatcaatgcgtcatagacaagttgttttgtgaatcttaatgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atggaagccactgagtgatcaatgcgtcatagacaagttgttttgtgaatcttaatgtga 503

                                                                       
Query: 301 ctttaagttcttagtgttctttgaaattcagtgctcttgcaattagaaaattatgggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctttaagttcttagtgttctttgaaattcagtgctcttgcaattagaaaattatgggaga 443

                                                                       
Query: 361 acattggttgggaggattttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 420
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 acattggctgggaggattttactgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 13
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)