BAC Information

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BAC

Clone NameMSMg01-514A10
Chromosome15 (Build37)
Map Location 70,420,904 - 70,421,551
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514A10.T7 (MSMg01no514_a10.b1)MSMg01-514A10.TJ (MSMg01no514_a10.g1)
ACCAG586608AG586609
length738742
length of high quality
(start - end)
627 (41 - 667)643 (70 - 712)
definitionCHROMAT_FILE: MSMg01no514_a10.b1 PHD_FILE: MSMg01no514_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:45 2005CHROMAT_FILE: MSMg01no514_a10.g1 PHD_FILE: MSMg01no514_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGCCCATTGTCTTGCTAAGGACGAACTAGGACTGTTGGAACACTGGCG
GACGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATGATAGG
AAAATAAATGAAAGAGAGCACGTGGATCCATACACTAGACTAACGCGGGA
ATGGAATGCGGGAATGAAAAATTACTGTATGGGTAGGGAGCGCTAGACTC
CAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTTTTAAG
CCTCTCGGCTTGTCCAGTTGACTGGACCAGAGAGCGTAGCAAGAAGCAGC
TGACCCCTATTGTTGAATTAGGAAAGGCATAAAGAATCTAAGGAGAGGGA
TAATCCTGTAGGAGGACCAGAAGTCTCAATTAATCTGGATCTGAGATCTC
TCAAATACTGGACCACCAAATAGACAGCATGCACCTGCTGTTATAAGGAC
CCCAACACACATACAGTAGAGAACTTCTGGGTCTTTGTTCATTCAGAGAT
GATGCACCTAACCCTCAAGATAATGGTGGCACCAGGACATTTAGAGGTTG
GGGGGCAAGAGGGCTGGGGGCATCCACGTGGAGTACGGGTGAAGTGGGGA
GGAGGTGTGTGATGTGGAGCTGTCTGGAGGTGGATCTCGNAGCTCTCCTT
TTTCTTTTCTCTTTTTCTCTCGTCCTCCTGTTTCCTTC
TGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCATCTGAGGAATAATGAGTGGCTGAGAAGT
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAAATGCAAATCAAA
ACAACCCTGAGATTCCTCCTCACACCAGTCAGAATGGCTAGGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCAAGGATGTTGAGAGAGAGGAGCACTCC
TCCTGCTTGTTTTTCTAAGAGATCTGTCTGCCCATGTCCTTCTTGCTTAA
GGTGGGAAAACTTAGAAAACACTTGCAGTCTCTTTGACTTGTGGGATATA
GATTCAAATCAATTCTCTGAAGCTTACAAGAATTGTTTTAAGATTTTAAG
TTTACAAAAAGAAATAAAAGTTTTAGATATGTTAATATTACCACAGTTTG
TAACCAGTTGTGATCTACTGCCAAAAACCAGACTTGACTTGGACAGGAGT
TCTGAGAGAAGGTATGTTTTGGATCTGCAAAAAGAATGACTTCCGAAGTC
AAATTGTGGGTCCTAGTTGACAACCTGTGTTATGCTTGATACATCTTTTC
CAGTCTGCTTCTCTCTATGTTCTGCTTACTCTATGGAGGTTGCTCTAGCT
ATATTATGCTTGCTTGGTATTCTAAGAGATCTCTTTGTCAATGTCTTGCT
TGCTTGTGTGTGTGTCAGTTGTCCAAGAAATTCTCTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_a10.g1 MSMg01no514_a10.g1 CHROMAT_FILE:
MSMg01no514_a10.g1 PHD_FILE: MSMg01no514_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:45 2005
         (643 letters)



>mm_chr15_70420766_70421814
          Length = 1049

 Score = 1137 bits (588), Expect = 0.0
 Identities = 633/650 (97%), Gaps = 9/650 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatctgaggaataatgagtggctgagaagtacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 786 tcatctgaggaataatgagtggctgagaagtacctgaaaaactgttcaacatccttaatc 727

                                                                       
Query: 61  atcaggaaaatgcaaatcaaaacaaccctgagattcctcctcacaccagtcagaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atcaggaaaatgcaaatcaaaacaaccctgagattcctcctcacaccagtcagaatggct 667

                                                                       
Query: 121 aggatcaaaaattcaggtgacagcagatgctggcaaggatgttgagagagaggagcactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aggatcaaaaattcaggtgacagcagatgctggcaaggatgttgagagagaggagcactc 607

                                                                       
Query: 181 ctcctgcttgtttttctaagagatctgtctgcccatgtccttcttgcttaaggtgg-gaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 606 ctcctgcttgtttttctaagagatctgtctgcccatgtccttcttgcttaaggtggtg-a 548

                                                                       
Query: 240 aacttaga--aa-ac---acttgcagtctctttgacttgtgggatatagattcaaatcaa 293
           ||||||||  || ||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aacttagaggaacacttaacttgcagtctctttgacttgtgggatatagattcaaatcaa 488

                                                                       
Query: 294 ttctctgaagcttacaagaattgttttaagattttaagtttacaaaaagaaataaaagtt 353
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 487 ttctctgaagcttacaagaattgttttaagcttttaagtttacaaaaagaaataaaagtt 428

                                                                       
Query: 354 ttagatatgttaatattaccacagtttgtaaccagttgtgatctactgccaaaaaccaga 413
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 427 ttagatatgttaatattaccacagtttgtaaccagttgtgatccactgccaaaaaccaga 368

                                                                       
Query: 414 cttgacttggacaggagttctgagagaaggtatgttttggatctgcaaaaagaatgactt 473
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 367 cttgacttggacaggggttctgagagaagttatgttttggatctgcaaaaagaatgactt 308

                                                                       
Query: 474 ccgaagtcaaattgtgggtcctagttgacaacctgtgttatgcttgatacatcttttcca 533
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccgaagtcaaattgtgggttctagttgacaacctgtgttatgcttgatacatcttttcca 248

                                                                       
Query: 534 gtctgcttctctctatgttctgcttactctatggaggttgctctagctatattatgcttg 593
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 247 gtctgcttctctcgatgttctgcttactctatggag-ttgctctagctatattatgcttg 189

                                                             
Query: 594 cttggtattctaagagatctctttgtcaatgtcttgcttgcttgtgtgtg 643
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tttggtattctaagagatctctttgtcaatgtcttgcttgcttgtgtgtg 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1049
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1039
Effective search space:   657687
Effective search space used:   657687
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)