Query= MSMg01no514_m18.b1 MSMg01no514_m18.b1 CHROMAT_FILE:
MSMg01no514_m18.b1 PHD_FILE: MSMg01no514_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:49 2005
(692 letters)
>mm_chr15_15320873_15321964
Length = 1092
Score = 1257 bits (650), Expect = 0.0
Identities = 684/702 (97%), Gaps = 13/702 (1%)
Strand = Plus / Plus
Query: 4 ggaatt-aattgactttctcatgagatgcacactagttgtcactaatgtttagcaccatg 62
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 191 ggaattcaattgactttctcatgagatgcacactagttgtcactaatgttgagcaccatg 250
Query: 63 ctctctcacccatt----gttctttcctacattgggtcaacatggtttggcagagaagtt 118
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctctctcacccattcattgttctttcctacattgggtcaacatggtttggcagagaagtt 310
Query: 119 aggagctcttgcagaggagccaagttcagtttctagcatccacacaatggctcacaacta 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aggagctcttgcagaggagccaagttcagtttctagcatccacacaatggctcacaacta 370
Query: 179 tccctcattccagtcccaaagcatccagtgctattttctgggttctgtagacagtgaggg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tccctcattccagtcccaaagcatccagtgctattttctgggttctgtagacagtgaggg 430
Query: 239 catatggattggatacacatgtgtgcatgcagacaaaacccattcatataaaataaacat 298
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 431 catatggattggatacacatgcgtgcatgcagacaaaacccagtcatataaaataaacat 490
Query: 299 agttaaatgtgttattttaattgtttccatttcccctggggagaaaggacatggtaatat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agttaaatgtgttattttaattgtttccatttcccctggggagaaaggacatggtaatat 550
Query: 359 gaaaatcaagactaataaataataatgtgatgagttgcaagagtttaattattgttgcaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaaaatcaagactaataaataataatgtgatgagttgcaagagtttaattattgttgcaa 610
Query: 419 aaattatacctcctttatctttctatttgtgcttcagagaaatacaa--------gaaga 470
||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 611 aaattatacctcctttatctttctacttgtgcttcagagaaatacaatgtaccaagaaga 670
Query: 471 aagggtctgtaccctagcacaaaaactgtttaccctttttttctagccctgtcaatcttc 530
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aagggtctgtaccctagcacagaaactgtttaccctttttttctagccctgtcaatcttc 730
Query: 531 tcttgttaccttttttatttttaatagcccttctttaactgaagactggtagaaggaatt 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tcttgttaccttttttatttttaatagcccttctttaactgaagactggtagaaggaatt 790
Query: 591 accttcagcattttttaagagaactcatataaggcattagagttaacattcaattacaac 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 accttcagcattttttaagagaactcatataaggcattagagttaacattcaattacaac 850
Query: 651 taaagcaagataatggaatccgaaagctgagttatatcttga 692
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 taaagcaagataatggaatccgaaagctgagttatatcttga 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_m18.g1 MSMg01no514_m18.g1 CHROMAT_FILE:
MSMg01no514_m18.g1 PHD_FILE: MSMg01no514_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:49 2005
(616 letters)
>mm_chr15_15439309_15440324
Length = 1016
Score = 1183 bits (612), Expect = 0.0
Identities = 615/616 (99%)
Strand = Plus / Minus
Query: 1 aaagccaatgcctaatttcatgaaccattggcttcaccttcacttagtttctctttgagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aaagccaatgcctaatttcatgaaccattggcttcaccttcacttagtttctctttgagc 757
Query: 61 cctttccttgaaagagaagtcctatctactgctttattttgtcttaattattacattatc 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 756 cctttccttgaaagagaagtcctatctattgctttattttgtcttaattattacattatc 697
Query: 121 aatgaggatatattgtgaacagaagacaattagactgtttgatgatttgactggagatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aatgaggatatattgtgaacagaagacaattagactgtttgatgatttgactggagatca 637
Query: 181 cttgattgcacgatgctttccagctcaatactctttactgtacattgtcagcaagaacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cttgattgcacgatgctttccagctcaatactctttactgtacattgtcagcaagaacac 577
Query: 241 ctcatctacctctagagccggaaggtagatgaactgatttacaaattaagatccagaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctcatctacctctagagccggaaggtagatgaactgatttacaaattaagatccagaaac 517
Query: 301 ctcggcggtctttgggggactctgcaattaaaatactactcagcgttttttagttcatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctcggcggtctttgggggactctgcaattaaaatactactcagcgttttttagttcatta 457
Query: 361 agaagtaatggtttcttgtgtgctttatattttcaggtaattggccaaggggtctcaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaagtaatggtttcttgtgtgctttatattttcaggtaattggccaaggggtctcaatg 397
Query: 421 ttaatcaaaaaaagtgtatgtaatgaattttagattatataaacaatttttatattagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaatcaaaaaaagtgtatgtaatgaattttagattatataaacaatttttatattagca 337
Query: 481 gataaagtgagtgaaggaagagtttgattacatggactgtgtttgcaatagttttccatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gataaagtgagtgaaggaagagtttgattacatggactgtgtttgcaatagttttccatt 277
Query: 541 ataaaatttctctgctttcaataacaatattctcacacaatacctcttataacatcccat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ataaaatttctctgctttcaataacaatattctcacacaatacctcttataacatcccat 217
Query: 601 gtaaaaatgaacttat 616
||||||||||||||||
Sbjct: 216 gtaaaaatgaacttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
