Query= MSMg01no515_f03.b1 MSMg01no515_f03.b1 CHROMAT_FILE:
MSMg01no515_f03.b1 PHD_FILE: MSMg01no515_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:35 2005
(642 letters)
>mm_chr15_95542261_95543297
Length = 1037
Score = 1087 bits (562), Expect = 0.0
Identities = 620/646 (95%), Gaps = 14/646 (2%)
Strand = Plus / Plus
Query: 5 gaattctcccttggaaatagattagtttctgtctaatcaggaacttttcacaatttcctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 198 gaattctcccttggaaatagattagtttctgtctaatcaggaacttttcacaatttcttt 257
Query: 65 tcatagaggactccataagaaaattttttttctacttctattgtgtttaatttttcaaat 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcatagaggactccataagaaaa-tttttttctacttctattgtgtttaatttttcaaat 316
Query: 125 agatttttaaaacctgttgagtgcatattacttttagcttcagaagttatcatgaatatt 184
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 317 agatttttaaaacctgttgagtgcatattacttttagcttcagaaaatatcatgaatatt 376
Query: 185 taagaggtatttaactattataaattattttgatgacttaaaaatgtcaatactgagttt 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taagagttatttaactattataaattattttgatgacttaaaaatgtcaatactgagttt 436
Query: 245 tatattttaaaataaatttcattagtttaataaaaaa--aaaaaaga------cataaga 296
||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 437 tatattttaaaataaatttcattagtttaataaaaaataaaaaaataaaaaggcataaga 496
Query: 297 ttccccaggactggagttacaggcagttgtgagctgtcatgtgggtgctgggaattgaac 356
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcccccaggactggagttacaggcagttgtgagctgtcatgtgggtgctgggaattgaac 556
Query: 357 ccagttcctgtagaagagcaattagtgttctcaactgcatagcattctttccaggcccta 416
|||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 557 ccaggtcctatagaagagcaattagtgttctcaagtgcatagcattctctccaggcccta 616
Query: 417 tttgcatatttattctaccatattgactttataactattgactagctagggaaaatgaaa 476
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 617 tttgcatatttattctaccatattgactttataactattgactagctggggaaaatga-- 674
Query: 477 tgataacaataataattgttctggatttgtacaaatggtactatctggaaagcacataca 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ---taacaataataattgttctggatttgtacaaatggtactatctggaaagcacataca 731
Query: 537 tcggtcacaggaaggacatagatcaaatggttctgtaacttgccaaagagacagaaccca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcggtcacaggaaggacatagatcaaatggttctgtaacttgccaaagagacagaaccca 791
Query: 597 attttaatatctatgctataaattccacaacatgaacaacctgtgt 642
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gttttaatatctatgctataaattccacaacatgaacaacctgtgt 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1037
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1027
Effective search space: 649064
Effective search space used: 649064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_f03.g1 MSMg01no515_f03.g1 CHROMAT_FILE:
MSMg01no515_f03.g1 PHD_FILE: MSMg01no515_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:35 2005
(605 letters)
>mm_chr15_95635145_95636149
Length = 1005
Score = 1123 bits (581), Expect = 0.0
Identities = 599/605 (99%)
Strand = Plus / Minus
Query: 1 aggccagaggagagaccctgcaaggaagatttgtgccagggagaaactgaaaaaaagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggccagaggagagaccctgcaaggaagatttgtgccagggagaaactgaaaaaaagcag 746
Query: 61 gagggtgcaggagcaaagccacctcggagaacacagacatcaagacgtgagagacagaca 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 745 gagggtgcaggagcaaagccacctcggagaacacagtcatcaagacgtgagagacagaca 686
Query: 121 cctggccatgccagctaaggaatgacaccagtctccatgaggcaaggaaaaagttgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 cctggccatgccagctaaggaatgacaccagtctccatgaggcaaggaaaaggttgagag 626
Query: 181 tcatgcatgactcatcagatgcaaacagtttactacagaatgctggttttgactaaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcatgcatgactcatcagatgcaaacagtttactacagaatgctggttttgactaaaggg 566
Query: 241 cttctcacaaacactgaggggatatccacttttcatgatgtaaaatacagaagggagctt 300
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 565 cttctcacaaacactgaggggatgtccacttctcatgatgtaaaatacagaagggagctt 506
Query: 301 ttcagccacatgctctgggattaaggcatccacaccaagcctggacagcgtgccattttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcagccacatgctctgggattaaggcatccacaccaagcctggacagcgtgccattttc 446
Query: 361 actacgtcagcatcaggaagctcaaggtcacgaggcccctgggagctgcttctcaaagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actacgtcagcatcaggaagctcaaggtcacgaggcccctgggagctgcttctcaaagga 386
Query: 421 tctgtcagctgccagatccacatgtctgcctaccaccaggagggatatgatttccccaca 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tctgtcagctgccagatccacatgtctgcctaccaccaggagggatatgacttccccaca 326
Query: 481 tcctagaaagcactgggtctttttcaggtggcgggctgaagctcagcctctctctcatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctagaaagcactgggtctttttcaggtggcgggctgaagctcagcctctctctcatac 266
Query: 541 catacccctttcaccatcttatatccaacagtcctaacatgaccgaagaatgacagcgaa 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 catacccctttcaccatcttatatccaacagtcctaacatgaccgaagaaggacagcgaa 206
Query: 601 aataa 605
|||||
Sbjct: 205 aataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
