Query= MSMg01no516_j19.b1 MSMg01no516_j19.b1 CHROMAT_FILE:
MSMg01no516_j19.b1 PHD_FILE: MSMg01no516_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:25 2005
(649 letters)
>mm_chr15_20631443_20632491
Length = 1049
Score = 1048 bits (542), Expect = 0.0
Identities = 612/644 (95%), Gaps = 17/644 (2%)
Strand = Plus / Minus
Query: 5 gaattcaactttgaacaacatgtctacatcaatgggaatacgatatttttcaaagaataa 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 803 gaattcaactttgaacaacatgtctacatcaatgggaatatgatatttttcaaagaataa 744
Query: 65 tgctaggacaagtgtctatagacactcatagaaaggaatgaaatattattgaaatattat 124
||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 743 tgctaggacaagtgtctat----actcatagaaaggaa-----------tgaaatattat 699
Query: 125 tccatcctcaaactatgtttaaagatgaactggttcataggttaggcatggtggtaagca 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tccatcctcaaactatgattaaagatgaactggttcataggttaggcatggtggtaagca 639
Query: 185 tgtgtactcctcaaagttgctagagacaggagtcctgtgaacatcttagcctaggctaca 244
|||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 638 tgtgtactcctctactttgctagagacaggagtcctgtgaacatgttagcctaggctaca 579
Query: 245 tatgaacttagttttataaggaggaaaaaaaattcatgaacacaagagaggtgctaaact 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 578 tatgaacttagttttataaggaggaaaaaaaa-tcatgaacacaagagaggtgctaaact 520
Query: 305 tgtaaattgaaaaatgtaatgcaagagtattttactaagtagaacttggcaaattgttcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtaaattgaaaaatgtaatgcaagagtattttactaagtagaacttggcaaattgttcc 460
Query: 365 caggaaaacaaaaga-ggaaaaaaacaatacaatcaattacatggattacaaccattaca 423
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 459 caggaaaacaaaagagggaaaaaaacaatacaatcaattacatgaattacaaccattaaa 400
Query: 424 atgtatatgcttcaaaggaggccattaaaaacctaatagtcaattgcattgccctggaaa 483
||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 399 atgtatatgcttcaaaggacaccattaaaaacctagtagtcaattgcattgctctggaaa 340
Query: 484 ggaaaatatttataagtcaaccctcccacacacacacttgcacacacgcacacgcgcatg 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggaaaatatttctaagtcaaccctcccacacacacacttgcacacacgcacacgcgcatg 280
Query: 544 cacacatgcacaaaatatatatatgaaagtatttaaaatatactccatataatctgcagt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cacacatgcacaaaatatatatatgaaagtatttaaaatatactccatataatctgcagt 220
Query: 604 cagacctgggcagtggtggcacacacctttaatcccagcacttg 647
||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 219 cagacctgggcagtggtggtgcacacctttaatcccagcacttg 176
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_j19.g1 MSMg01no516_j19.g1 CHROMAT_FILE:
MSMg01no516_j19.g1 PHD_FILE: MSMg01no516_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:25 2005
(594 letters)
>mm_chr15_20483909_20484902
Length = 994
Score = 1118 bits (578), Expect = 0.0
Identities = 591/596 (99%), Gaps = 2/596 (0%)
Strand = Plus / Plus
Query: 1 agtagagtaccttctgtttctattttgtggagtagtttgaggagaagtggaataaggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagagtaccttctgtttctattttgtggagtagtttgaggagaagtggaataaggtct 260
Query: 61 tctttgaaggtctgatagaactcagcactaaaaccatctggtcctgggctttttttcgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tctttgaaggtctgatagaactcagcactaaaaccatctggtcctgggctttttttcatt 320
Query: 121 cggagactgttaatgattacttctatttctttagggtatgttggacagtttagatcatta 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tggagactgttaatgattacttctatttctttagggtatgtgggacagtttagatcatta 380
Query: 181 atctgatactgatttaattttggtacctggtatctgtctagaaatttgtctattttatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgatactgatttaattttggtacctggtatctgtctagaaatttgtctattttatcc 440
Query: 241 aggttctccagttttgttgaggatcacacctttattttcaatgttactgcacttatatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggttctccagttttgttgaggatcacacctttattttcaatgttactgcacttatatta 500
Query: 301 taataactgcaatgtttgcaggtaatttactttgactaagattcttgtacatattcagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taataactgcaatgtttgcaggtaatttactttgactaagattcttgtacatattcagca 560
Query: 361 ttgtgtatatatttgttgagtgtcaattaatgtatttaaactgtctaaatgtgataaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgtatatatttgttgagtgtcaattaatgtatttaaactgtctaaatgtgataaatt 620
Query: 421 atgaggatacttaaacatactttcattatgtaataacatatatatatatatatat--taa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 atgaggatacttaaacatactttcattatgtaataacatatatatatatatatatattaa 680
Query: 479 tttagagataaaaatattttactcacttaccttagttcaccatttaatcctttgtagcct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttagagataaaaatattttactcacttaccttagttcaccatttaatcctttgtagcct 740
Query: 539 ttccatgaagatctagttatggtgtcttataggatgtattaacatcactaatgaaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttccatgaagatctagttatggtgtcttataggatgtattaacatcactaatgaaa 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
