Query= MSMg01no517_b13.b1 MSMg01no517_b13.b1 CHROMAT_FILE:
MSMg01no517_b13.b1 PHD_FILE: MSMg01no517_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:04 2005
(634 letters)
>mm_chr15_23692308_23693341
Length = 1034
Score = 1120 bits (579), Expect = 0.0
Identities = 618/633 (97%), Gaps = 4/633 (0%)
Strand = Plus / Minus
Query: 5 gaattcagaaataaaacctcatataaaagcaattttctttttaattgattttttcattaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaattcagaaataaaacctcatataaaagcaattttctttttaattgattttttcattaa 718
Query: 65 cttattctggatttgtaatactactcaagtgacaaatggaaagtgaaatgcaaaacagtc 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cttattctggattcgtaatactactcaagtgacaaatggaaagtgaaatgcaaaacagtc 658
Query: 125 ttaaatttagttttaaaaatggatgtcatatatacacatatacat----acatacacaca 180
|||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 657 ttaaatttggttttaaaaatggatgtcatatatacacatatacatacacacacacacaca 598
Query: 181 cacacacacacactcacaggattcagaaaaatatatgtgcacatttaagccataggttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cacacacacacactcacaggattcagaaaaatatatgtgcacatttaagccataggttat 538
Query: 241 gtccactgatatttttataattactctaccatttttttatactcaaataattttattttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtccactgatatttttataattactctaccatttttttatactcaaataattttattttc 478
Query: 301 cttctgactcacatcacagttactcagagttctaatttaggttgttatataatgtccatc 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cttctgactcacatcatagttactcagagttctaatttaggttgttatataatgtccatc 418
Query: 361 ttgttttgagtaccatgtttctgacccagaactgttcctgtctgaaagaaatgtagaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 417 ttgttttgagtaccatgtttctgacccagaactgttcctgtctgaaagaaatgtaaaaac 358
Query: 421 aaaaatggagcagagactgaagaaatggcaggccagtgaccgtgccaacttgggatccat 480
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 357 aaaaatggagcagagactgaagaaatggcaggccagtgaccttcccaacttgggatccat 298
Query: 481 gggagaacaccaaaccctgacactattactgatgctatgttgtgcttgcagacagaaatt 540
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 297 gggagaacagcaaaccctgacactattactgatgctatgttgtgcttgcaggcagaaatt 238
Query: 541 tagcattgctgtcctctgagaggctctaccagcagctgactgagacagatatagacatat 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 237 taacattgctgtcctctgagaggctctaccagcagctgactgagacagatatagatatat 178
Query: 601 acagccagccattggactaaggtcagggactcc 633
|||||||||||||||||||||||||||||||||
Sbjct: 177 acagccagccattggactaaggtcagggactcc 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_b13.g1 MSMg01no517_b13.g1 CHROMAT_FILE:
MSMg01no517_b13.g1 PHD_FILE: MSMg01no517_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:04 2005
(587 letters)
>mm_chr15_23514195_23515181
Length = 987
Score = 1081 bits (559), Expect = 0.0
Identities = 580/587 (98%)
Strand = Plus / Plus
Query: 1 ttagattttgaggcctgtctcttgaaactgttctgtcacaacaagaaaaataaaaattta 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttagattttgaggcctgtctcttgaaattgttctgtcacaacaagaaaaataaaaattta 260
Query: 61 gagcaagggagataaccgtgaggggtcaaccacggaactttgtatagcccggataacata 120
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gagcaaaggagataaccgtgaggggtcaaccacggaactttgtatagcctggataacata 320
Query: 121 tgccatgagtctttgggtgacagcgcaagccaaagatataatgtttgacccctgcttggc 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccatgagtctttgggtgagagcgcaagccaaagatataatgtttgacccctgcttggc 380
Query: 181 acatctcttcagggaggaactccacttatcagagcttcaggacatggctgcttctcagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatctcttcagggaggaactccacttatcagagcttcaggacatggctgcttctcagat 440
Query: 241 aggcctgggaatctgtacactagaagacttgaaaggcaaaccatggtctaacagacattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcctgggaatctgtacactagaagacttgaaaggcaaaccatggtctaacagacattt 500
Query: 301 gtccgcaatattaaaaatcacagagactttgctgagtcaggagtcctcaaccttccttct 360
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccccaatattaaaaatctcagagactttgctgagtcaggagtcctcaaccttccttct 560
Query: 361 gctaagcatatttgttttcagaatggaccatatcctatttctgactcaccaattattttt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gctaagcatatttgttttcagaatggaccatatcctattcctgactcaccaattattttt 620
Query: 421 gaagcaattgtgcttagtgttatggcctcaaatttagaacatacatttactctaggaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagcaattgtgcttagtgttatggcctcaaatttagaacatacatttactctaggaata 680
Query: 481 attgtacttcaaaacttacatgtatctgatttagattaggtgtagatgaggcttatgctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgtacttcaaaacttacatgtatctgatttagattaggtgtagatgaggcttatgctt 740
Query: 541 tttgtgggtagagtccttgctgggatgaattaagaatatgggactgt 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgtgggtagagtccttgctgggatgaattaagaatatgggactgt 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
