BAC Information

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BAC

Clone NameMSMg01-517F23
Chromosome15 (Build37)
Map Location 51,253,579 - 51,403,061
singlet/doubletdoublet
Overlap geneLOC100039662
Upstream geneTrps1, LOC100039644
Downstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517F23.T7 (MSMg01no517_f23.b1)MSMg01-517F23.TJ (MSMg01no517_f23.g1)
ACCAG589139AG589140
length783797
length of high quality
(start - end)
331 (58 - 388)216 (65 - 280)
definitionCHROMAT_FILE: MSMg01no517_f23.b1 PHD_FILE: MSMg01no517_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:26 2005CHROMAT_FILE: MSMg01no517_f23.g1 PHD_FILE: MSMg01no517_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,253,579 - 51,253,909)(51,402,846 - 51,403,061)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCAGAA
ACGACGTCAGTGAACAGGCTAATAGAAGCTCAACACTGACAGTTCTGGAA
AGCTGTTTTTGAACATACCAGAATTTGTGTCTATCTTATTTCTAACAAAG
TAAAGAAAACCATGCTTCCACCTGTGTGTGTGTAATTCACTAGAGAGAGG
AAGAAAAATGTTAAACAATCATACTTTGCATGTCACAGATAGATGTAAGA
ATAAAAATGTTAGCAGTGTCCTGATGGGAAAAATAGGAAAGGATGGTTTA
TGTAATAAGAGGAATGCAGAAAATTATGTTTGAAAGGAATAAAAGCAAAT
AAAATAAAATTGTATTGACATAAAAGGAAAATTGTCCCAGTTATAAGCAC
AAGAATTGTAGAAAAGAATGGCCACGAGAAAAGGGAAAAACAAGTTGATA
AGAATTCCACAAGAGTGGTAGGGACATAACTCGGCCACTAAAGCACTTGC
TGTTCAGAAGAGAGGGACCAAGTGTGAATACAGAGGACCCAGAAGAGACC
TGACCATGGCAATGTGTGCCTGAAACCTTAGTATGCGTAAAGAGAGATAG
GAGAAACTTCCAGGAGAACCACAGGGTCTTACTGAGCCAGCTACCTTGGA
ATATGCAGAAGTAACTGACAAAATAGATCTTGTCTCANATATGGTGGAAG
AAAAAAAAACACTCAAATTTGTCTTCTGACGCCCCCCCTCCCACCAACTG
TGCCATGACAACACATACACGCTCTGACCACTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTAAGATACTGTGAAAAATCAAGATTGTTTATTC
TTACTACTGAATGAATGAAATTCATTTATAATGTTGCTTACAGTTGGTGA
TTTCTCATTCATCCCTTGGTTCTTGAAATAGCTAGAAGTTTCCTGATGCT
AGAATGATAACTATCCAAATATGTCCTCATTCTAATGCCGCTATATGTTA
CCTAAGTAGGCAAAAGAAATTTTTACTGAGGGCATTAAGTTGAGGGTCTT
TAAACGGGGATATTTACTGCATCCCCCACCCCCATAAATCTCCATGAGAG
GAAGATGAGGGAGTCAAGTTCTGACGGGAGATGTGATGGAAACAGGAGGC
TAATGTGATGTGCCTTCAAGGTGGAGAAAGGTTTCAATACAAGGATGGCC
CATAGCACTCTGCATGAGAAGTGGCGACAAAATAGATCTACCCTTGGCTT
CTTCACAGGGACAGAAGTTACACTGATTCATGATTTTTACCTAGGAGATA
CAGTTTAAAATGAAGAACTAAAAACTATATGAAAATAATCTGTTGCTTTA
AGCCTGGAAGATCAGTTATTCATACCATCAATGGGAAAATGGTACAGGCT
GCTTATGGGAAGTGCTTATGGAACAATTCTAGCACATGTATTTTGATATC
AAACAGTCATATTCTCAGAGGGAGATGGCTGAGTCACACGATGTGAGTAT
TTCTACTGCAGGTGATGATGCCAATAAATTTCTATGTGCAAAAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_f23.b1 MSMg01no517_f23.b1 CHROMAT_FILE:
MSMg01no517_f23.b1 PHD_FILE: MSMg01no517_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:26 2005
         (331 letters)



>mm_chr15_51253379_51254109
          Length = 731

 Score =  640 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgaacaggctaatagaagctcaacactgacagttctggaaagctgtttttgaacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgaacaggctaatagaagctcaacactgacagttctggaaagctgtttttgaacata 260

                                                                       
Query: 61  ccagaatttgtgtctatcttatttctaacaaagtaaagaaaaccatgcttccacctgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaatttgtgtctatcttatttctaacaaagtaaagaaaaccatgcttccacctgtgt 320

                                                                       
Query: 121 gtgtgtaattcactagagagaggaagaaaaatgttaaacaatcatactttgcatgtcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtaattcactagagagaggaagaaaaatgttaaacaatcatactttgcatgtcaca 380

                                                                       
Query: 181 gatagatgtaagaataaaaatgttagcagtgtcctgatgggaaaaataggaaaggatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagatgtaagaataaaaatgttagcagtgtcctgatgggaaaaataggaaaggatggt 440

                                                                       
Query: 241 ttatgtaataagaggaatgcagaaaattatgtttgaaaggaataaaagcaaataaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgtaataagaggaatgcagaaaattatgtttgaaaggaataaaagcaaataaaataa 500

                                          
Query: 301 aattgtattgacataaaaggaaaattgtccc 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 aattgtattgacataaaaggaaaattgtccc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no517_f23.g1 MSMg01no517_f23.g1 CHROMAT_FILE:
MSMg01no517_f23.g1 PHD_FILE: MSMg01no517_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:26 2005
         (216 letters)



>mm_chr15_51402646_51403261
          Length = 616

 Score =  410 bits (212), Expect = e-119
 Identities = 215/216 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaagatactgtgaaaaatcaagattgtttattcttactactgaatgaatgaaattca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 416 atttaagatactgtgaaaaatcaatattgtttattcttactactgaatgaatgaaattca 357

                                                                       
Query: 61  tttataatgttgcttacagttggtgatttctcattcatcccttggttcttgaaatagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tttataatgttgcttacagttggtgatttctcattcatcccttggttcttgaaatagcta 297

                                                                       
Query: 121 gaagtttcctgatgctagaatgataactatccaaatatgtcctcattctaatgccgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gaagtttcctgatgctagaatgataactatccaaatatgtcctcattctaatgccgctat 237

                                               
Query: 181 atgttacctaagtaggcaaaagaaatttttactgag 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 atgttacctaagtaggcaaaagaaatttttactgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)